Description Usage Arguments Value Author(s) See Also

A plotting function to plot the confidence intervals of the estimated *pi[0]* values returned from eventTiming

1 2 3 4 |

`est` |
vector of the estimates of |

`ui` |
vector of the upper values for the confidence interval of the |

`li` |
vector of the lower values for the confidence interval of the |

`samples` |
vector indicating which sample each |

`labels` |
character vector of the labels of each estimate (optional) |

`xlab` |
label for the xaxis, defaults to “Segment” |

`ylab` |
label for the yaxis, defaults to “ |

`pchFac` |
vector of pch values for the center of the confidence interval |

`whHighlight` |
a vector of indices of the estimates that should be ‘highlighted’ by coloring their confidence intervals red (optional) |

`nMut` |
a vector of values of the number of mutations from each confidence interval to be printed at the top of the plot |

`xorder` |
a vector giving an ordering of the estimates for the confidence intervals; if NULL, an order within each sample is created automatically. |

`...` |
arguments passed to plotCI function |

The order of the estimates found internally by the program (or given by the user) are returned invisibly.

Elizabeth Purdom

plotCI, eventTiming

epurdom/cancerTiming documentation built on May 13, 2017, 7:13 p.m.

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