PsiLFC: Psi LFC effect size estimator

In erhard-lab/lfc: Log Fold Change Distribution Tools for Working with Ratios of Counts

Psi LFC effect size estimator

Description

Computes the optimal effect size estimate and credible intervals if needed.

Usage

PsiLFC(
  A,
  B,
  prior = EmpiricalBayesPrior(A, B),
  normalizeFun = CenterMedian,
  cre = FALSE,
  verbose = FALSE
)

Arguments

A	Vector of counts from condition A
B	Vector of counts from condition B
prior	Vector of length 2 of the prior parameters
normalizeFun	Function to normalize the obtained effect sizes
cre	Compute credible intervals as well? (can also be a vector of quantiles)
verbose	verbose status updates?

Value

Either a vector containing the estimates, or a data frame containing the credible interval as well

Examples

  PsiLFC(rnorm(1000,200),rnorm(1000,100))

erhard-lab/lfc documentation built on April 25, 2023, 6:59 a.m.