PsiLFC.se: Psi LFC effect size estimator

In erhard-lab/lfc: Log Fold Change Distribution Tools for Working with Ratios of Counts

Psi LFC effect size estimator

Description

Computes the optimal effect size estimate and credible intervals if needed for a Bioconductor SummarizedExperiment object

Usage

PsiLFC.se(se, contrast, cre = FALSE)

Arguments

se	SummarizedExperiment object
contrast	Vector of length 3 (<name>,<A>,<B>)
cre	Compute credible intervals as well? (can also be a vector of quantiles)

Value

Either a vector containing the estimates, or a data frame containing the credible interval as well

Examples

## Not run: 
   data(airway, package="airway")
   head(PsiLFC.se(airway,contrast=c("dex","untrt","trt")))

## End(Not run)

erhard-lab/lfc documentation built on April 25, 2023, 6:59 a.m.