results: Psi LFC effect size estimator for DESeq2

In erhard-lab/lfc: Log Fold Change Distribution Tools for Working with Ratios of Counts

Psi LFC effect size estimator for DESeq2

Description

Drop-in replacement for DESeq2's results function for simple settings involving a single variable. Appends the PsiLFC estimate.

Usage

results(object, contrast, cre = FALSE, ...)

Arguments

object	the DESeq2DataSet object
contrast	Vector of length 3, specifying the variable and the two levels to compute effect sizes for (<name>,<A>,<B>)
cre	Compute credible intervals as well? (can also be a vector of quantiles)
...	Handed over to DESeq2's results function

Value

Either a vector containing the estimates, or a data frame containing the credible interval as well

erhard-lab/lfc documentation built on April 25, 2023, 6:59 a.m.