read_mendel_outped: pick the genotypes out of the Mendel output pedigree file to...

In eriqande/CKMRsim: Inference of Pairwise Relationships Using Likelihood Ratios

pick the genotypes out of the Mendel output pedigree file to use to compute Q

Description

Not sure exactly how I am going to do this, as we need to include genotyping error on there as well. Crap. But at least I have a start on how to parse this monstrous file. This assumes that the focal pair of individuals are labeled 1 and 2.

Usage

read_mendel_outped(Input, NumA, verbose)

Arguments

Input	the path to the Mendel output file to read in.
NumA	the number of alleles at each locus
verbose	integer flag. 1 gives verbose output. 0 does not.

Examples

## Not run: 
read_mendel_outped("/Users/eriq/Desktop/mendel-example-Ped.out")

## End(Not run)

eriqande/CKMRsim documentation built on Aug. 2, 2024, 7:23 a.m.