sebastes: Microhaplotype data from kelp rockfish _Sebastes atrovirens_
In eriqande/CKMRsim: Inference of Pairwise Relationships Using Likelihood Ratios
sebastes R Documentation
Microhaplotype data from kelp rockfish Sebastes atrovirens
Description
These are data from 165 amplicons sequenced in two different runs of an Illumina
MiSeq machine at the SWFSC lab in Santa Cruz. Genotypes of roughly 150 individuals
were called an resolved into haplotypes using the fact that each short read comes
from a single chromosome.
Usage
sebastes
Format
This tibble includes 825 alleles/haplotypes from 165 genomic regions and
is in the format of long_markers. However since true positions
of these markers in the genome are not known, it is instructive to see from these data
how to insert them into the format of long_markers. Simply the column
Chrom simply has "GTseq" in it, denoting that these are markers obtained from
a GTseq procedure. Locus has the name of each locus in it. The column
Pos has a simple index for each locus. They don't denote genomic positions, but they
are useful for sorting things if you run the data through reindex_markers. The
Allele column gives the sequences of each allele/haplotype observed in the population.
eriqande/CKMRsim documentation built on Aug. 2, 2024, 7:23 a.m.
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| sebastes | R Documentation |
Microhaplotype data from kelp rockfish Sebastes atrovirens
Description
These are data from 165 amplicons sequenced in two different runs of an Illumina MiSeq machine at the SWFSC lab in Santa Cruz. Genotypes of roughly 150 individuals were called an resolved into haplotypes using the fact that each short read comes from a single chromosome.
Usage
sebastes
Format
This tibble includes 825 alleles/haplotypes from 165 genomic regions and
is in the format of long_markers. However since true positions
of these markers in the genome are not known, it is instructive to see from these data
how to insert them into the format of long_markers. Simply the column
Chrom simply has "GTseq" in it, denoting that these are markers obtained from
a GTseq procedure. Locus has the name of each locus in it. The column
Pos has a simple index for each locus. They don't denote genomic positions, but they
are useful for sorting things if you run the data through reindex_markers. The
Allele column gives the sequences of each allele/haplotype observed in the population.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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