traditional_sib_yank: given a one generation pedigree returns individuals you will...
In eriqande/afblue: Best Linear Unbiased Erediction of Allele Frequencies Given Pairwise Kinship
Description
Usage
Arguments
Value
Description
This does what we did in the NorCal steelhead paper. For any inferred sibship of size strictly greater
then Asize, remove all the individuals except for NumLeft of them randomly chosen. The defaults
reflect what we have done in the past.
Usage
1
traditional_sib_yank(ped, Asize = 2, NumLeft = 1)
Arguments
ped
A pedigree with colums at least of id, mom, dad. If mom or dad is NA, those rows are
removed. (so you can use the result of read_colony_best_config).
Asize
yank individuals out of full sibships that are strictly larger than this
NumLeft
in a sibship of size larger than Asize, NumLeft indivdiuals will be left
Value
Returns a vector of id labels that will be kept
eriqande/afblue documentation built on May 16, 2019, 8:44 a.m.
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Description Usage Arguments Value
Description
This does what we did in the NorCal steelhead paper. For any inferred sibship of size strictly greater then Asize, remove all the individuals except for NumLeft of them randomly chosen. The defaults reflect what we have done in the past.
Usage
1 | traditional_sib_yank(ped, Asize = 2, NumLeft = 1)
|
Arguments
ped |
A pedigree with colums at least of id, mom, dad. If mom or dad is NA, those rows are
removed. (so you can use the result of |
Asize |
yank individuals out of full sibships that are strictly larger than this |
NumLeft |
in a sibship of size larger than Asize, NumLeft indivdiuals will be left |
Value
Returns a vector of id labels that will be kept
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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