matrix_L_from_pedigree: given a pedigree as a data frame return the L matrix
In eriqande/afblue: Best Linear Unbiased Erediction of Allele Frequencies Given Pairwise Kinship
Description
Usage
Arguments
Examples
Description
given a pedigree as a data frame return the L matrix
Usage
1
matrix_L_from_pedigree(D, Ids)
Arguments
D
a data frame with columns id, mom, dad, and sex that can be read
into kinship2's pedigree function
Ids
the IDs/labels of the individuals you want the matrix to refer to
(i.e. the sampled individuals.)
Examples
1
2
3
4
example(read_colony_best_config)
# here are the ones we are interested in
Ids <- bcped$id[!is.na(bcped$dad)]
Lmat <- matrix_L_from_pedigree(bcped, Ids)
eriqande/afblue documentation built on May 16, 2019, 8:44 a.m.
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Description Usage Arguments Examples
Description
given a pedigree as a data frame return the L matrix
Usage
1 | matrix_L_from_pedigree(D, Ids)
|
Arguments
D |
a data frame with columns id, mom, dad, and sex that can be read into kinship2's pedigree function |
Ids |
the IDs/labels of the individuals you want the matrix to refer to (i.e. the sampled individuals.) |
Examples
1 2 3 4 | example(read_colony_best_config)
# here are the ones we are interested in
Ids <- bcped$id[!is.na(bcped$dad)]
Lmat <- matrix_L_from_pedigree(bcped, Ids)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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