meta-info: Path to the meta information YAML file

In facilebio/FacileData: A fluent API for accessing multi-assay high-throughput genomics data

Path to the meta information YAML file

Description

Lots of useful information is stored in a FacileDataSet's meta.yaml file. This function returns all of that in a list-of-lists

A FacileDataSet can contain assay data from different "datasets" (such as different cancer indications from the TCGA). This functions returns description and URL information that describes these datasets in more detail, which is specified in the FacileDataSets meta.yaml file.

Usage

meta_file(x)

meta_info(x, fn = meta_file(x))

## S3 method for class 'FacileDataSet'
default_assay(x)

dataset_definitions(x, as.list = TRUE)

Arguments

x	A FacileDataSet
fn	The path to the meta.yaml file.
as.list	boolean, if FALSE (default) returns a list, otherwise summarizes results into a tibble.

Value

The meta.yaml file parsed into a list-of-lists representation

meta information about the datasets in x as a list or tibble

See Also

Other FacileDataSet: FacileDataSet(), dbfn(), hdf5fn()

facilebio/FacileData documentation built on Feb. 23, 2024, 9:14 a.m.