ModuleFrequency: Statistics of all conditions
In fairmiracle/MODA: MODA: MOdule Differential Analysis for weighted gene co-expression network
Description
Usage
Arguments
Value
Author(s)
See Also
Description
Statistics of all conditions. To highlight conserved or condition-specific
by counting how frequent each module is lablelled as which, and then
visualize the frequency by bar plot.
Usage
1
2
ModuleFrequency(ResultFolder, intModules, conditionNames, legendNames,
indicator)
Arguments
ResultFolder
where to store results
intModules
how many modules in the background network
conditionNames
a character vector, each of them is the name
legendNames
a character vector, each of them is the condition name
showing up in the frequency barplot
of condition. Or just single name
indicator
identifier of current profile, served as a tag in name
Value
None
Author(s)
Dong Li, dxl466@cs.bham.ac.uk
See Also
WeightedModulePartitionHierarchical,
WeightedModulePartitionLouvain,
WeightedModulePartitionSpectral,
WeightedModulePartitionAmoutain,
CompareAllNets
fairmiracle/MODA documentation built on May 16, 2019, 9:59 a.m.
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Description Usage Arguments Value Author(s) See Also
Description
Statistics of all conditions. To highlight conserved or condition-specific by counting how frequent each module is lablelled as which, and then visualize the frequency by bar plot.
Usage
1 2 | ModuleFrequency(ResultFolder, intModules, conditionNames, legendNames,
indicator)
|
Arguments
ResultFolder |
where to store results |
intModules |
how many modules in the background network |
conditionNames |
a character vector, each of them is the name |
legendNames |
a character vector, each of them is the condition name showing up in the frequency barplot of condition. Or just single name |
indicator |
identifier of current profile, served as a tag in name |
Value
None
Author(s)
Dong Li, dxl466@cs.bham.ac.uk
See Also
WeightedModulePartitionHierarchical,
WeightedModulePartitionLouvain,
WeightedModulePartitionSpectral,
WeightedModulePartitionAmoutain,
CompareAllNets
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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