NMImatrix: Illustration of network comparison by NMI

In fairmiracle/MODA: MODA: MOdule Differential Analysis for weighted gene co-expression network

Description

Compare the background network and a set of condition-specific network. returning a pair-wise matrix to show the normalized mutual information between each pair of networks in terms of partitioning

Usage

NMImatrix(ResultFolder, intModules, indicator, intconditionModules,
  conditionNames, Nsize, legendNames = NULL, plt = FALSE)

Arguments

ResultFolder	where to store results
intModules	how many modules in the background network
indicator	identifier of current profile, served as a tag in name
intconditionModules	a numeric vector, each of them is the number of modules in each condition-specific network. Or just single number
conditionNames	a character vector, each of them is the name of condition. Or just single name
Nsize	The number of genes in total
legendNames	a character vector, each of them is the condition name showing up in the similarity matrix plot if applicable
plt	a boolean value to indicate whether plot the similarity matrix

Value

NMI matrix indicating the similarity between each two networks

Author(s)

Dong Li, [e-mail]

See Also

CompareAllNets

fairmiracle/MODA documentation built on May 16, 2019, 9:59 a.m.