Description Usage Arguments Value Examples
View source: R/phylo_functions.r
For simulating coalescent times using the method of thinning.
This function is based on code written by Michael Karcher for the phylodyn
package.
1 | coaltimeSim(samp_times, n_sampled, traj, lower_bound, ...)
|
samp_times |
numeric vector of sampling times. |
n_sampled |
numeric vector of samples taken per sampling time. |
traj |
function that returns effective population size at time t. |
lower_bound |
numeric lower limit on |
... |
additional arguments to be passed to |
A list containing vectors of coalescent times coal_times
,
intercoalescent times intercoal_times
, and number of active lineages
lineages
, as well as passing along samp_times
and
n_sampled
.
1 | coaltimeSim(0:2, 3:1, unif_traj, lower_bound=10, level=10)
|
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