Files in faulknerjam/bnps
Shrinkage-Prior Markov Random Field Smoothing
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/extract_theta.r
R/get_init.r
R/get_model.r
R/make_coalescent_data.r
R/phylo_functions.r
R/plot_trace.r
R/plot_trend.r
R/set_zeta.r
R/set_zeta_phylo.r
R/spmrf.r
R/trajectories.r
R/varRef.r
README.md
data/coal.rda
data/hcv.rda
data/munich.rda
data/rain.rda
man/boomBust_traj.Rd
man/bottleNeck_traj.Rd
man/coal.Rd
man/coaltimeSim.Rd
man/coaltimeSimGP.Rd
man/extract_theta.Rd
man/get_init.Rd
man/get_model.Rd
man/hcv.Rd
man/makeGrid.Rd
man/make_coalescent_data.Rd
man/munich.Rd
man/piecewiseExp_traj.Rd
man/plot_trace.Rd
man/plot_trend.Rd
man/rain.Rd
man/set_zeta.Rd
man/set_zeta_phylo.Rd
man/skyLine.Rd
man/spmrf.Rd
man/varRef.Rd
vignettes/.DS_Store
vignettes/coal_mining_example.R
vignettes/coal_mining_example.Rmd
vignettes/coal_mining_example.html
vignettes/figure/bottleneck_trace_hs_gam.png
vignettes/figure/bottleneck_trace_hs_tau10.png
vignettes/figure/bottleneck_trace_hs_th10.png
vignettes/figure/coal_plots.png
vignettes/figure/hcv_hs_traces_gam.png
vignettes/figure/hcv_hs_traces_tau17.png
vignettes/figure/hcv_hs_traces_th17.png
vignettes/figure/hcv_posterior_plots.png
vignettes/figure/pc_func.png
vignettes/figure/pc_plots.png
vignettes/figure/phylo_bottleneck_posterior_plots.png
vignettes/figure/phylo_bottleneck_traj.png
vignettes/figure/rent_plots.png
vignettes/figure/trace_gam_rent_H.png
vignettes/figure/trace_gamma_coal_H.png
vignettes/figure/trace_gamma_pc_H.png
vignettes/figure/trace_gamma_vs_H.png
vignettes/figure/trace_tau20_rent_H.png
vignettes/figure/trace_theta20_coal_H.png
vignettes/figure/trace_theta20_pc_H.png
vignettes/figure/trace_theta20_vs_H.png
vignettes/figure/trace_theta21_rent_H.png
vignettes/figure/vs_func.png
vignettes/figure/vs_plots.png
vignettes/introduction_to_spmrf.R
vignettes/introduction_to_spmrf.Rmd
vignettes/introduction_to_spmrf.html
vignettes/phylodynamics_examples.R
vignettes/phylodynamics_examples.Rmd
vignettes/phylodynamics_examples.html
vignettes/unequal_grid_and_covariate_example.R
vignettes/unequal_grid_and_covariate_example.Rmd
vignettes/unequal_grid_and_covariate_example.html
