coaltimeSimGP: Simulate from inhomogeneous, heterochronous coalescent driven...
In faulknerjam/bnps: Shrinkage-Prior Markov Random Field Smoothing

For simulating coalescent times using the method of thinning. This function is based on code written by Michael Karcher for the phylodyn package.

1	coaltimeSimGP(samp_times, n_sampled, trajvec, tvec, lower_bound)

`samp_times`	numeric vector of sampling times.
`n_sampled`	numeric vector of samples taken per sampling time.
`trajvec`	vector of population sizes (should be dense)
`tvec`	grid boundaries for trajvec. Length is length(trajvec)+1
`lower_bound`	numeric lower limit on `traj` function on its support.

A list containing vectors of coalescent times coal_times, intercoalescent times intercoal_times, and number of active lineages lineages, as well as passing along samp_times and n_sampled.

faulknerjam/bnps documentation built on Sept. 26, 2020, 8:07 p.m.