Man pages for fcampelo/TaxonSampling
Hierarchical Taxonomic Sampling for Maximized Diversity at All Levels
| extract_sequences | Write sequences associated with sampled IDs to a multifasta... |
| extract_taxlevel | Extract the desired ancestry level of a list of taxonomy IDs |
| get_counts | Return the relevant counts for running TaxonSampling |
| get_summary_df | Generate a summary dataframe from the result of run_TS |
| get_taxID_spp_counts | Count number of species under each taxonomy ID |
| plot.taxonsampling | plot.taxonsampling |
| retrieve_data_files | Retrieve data files from the Github repository |
| retrieve_NCBI_taxonomy | Retrieve NCBI taxonomy file from public database |
| run_TS | Run Taxon Sampling |
| summary.taxonsampling | summary.taxonsampling |
