extract_sequences: Write sequences associated with sampled IDs to a multifasta...

Description Usage Arguments Value

View source: R/extract_sequences.R

Description

Write sequences associated with sampled IDs to a multifasta file.

Usage

1
extract_sequences(taxlist, seq_file, verbose = TRUE)

Arguments

taxlist

list containing vector '$outputIDs' of sampled IDs (returned by [run_TS()]).

seq_file

character string with the path to the multifasta file containing the input sequences.

verbose

logical: regulates function echoing to console.

Value

Updated 'taxlist' containing field 'outputSeqs', a data frame with information on the sampled sequences.


fcampelo/TaxonSampling documentation built on Jan. 14, 2022, 9:42 p.m.