extract_sequences: Write sequences associated with sampled IDs to a multifasta...
In fcampelo/TaxonSampling: Hierarchical Taxonomic Sampling for Maximized Diversity at All Levels
Description
Usage
Arguments
Value
View source: R/extract_sequences.R
Description
Write sequences associated with sampled IDs to a multifasta file.
Usage
1
extract_sequences(taxlist, seq_file, verbose = TRUE)
Arguments
taxlist
list containing vector '$outputIDs' of sampled IDs (returned
by [run_TS()]).
seq_file
character string with the path to the multifasta file
containing the input sequences.
verbose
logical: regulates function echoing to console.
Value
Updated 'taxlist' containing field 'outputSeqs', a data frame with
information on the sampled sequences.
fcampelo/TaxonSampling documentation built on Jan. 29, 2022, 7:11 a.m.
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Description Usage Arguments Value
View source: R/extract_sequences.R
Description
Write sequences associated with sampled IDs to a multifasta file.
Usage
1 | extract_sequences(taxlist, seq_file, verbose = TRUE)
|
Arguments
taxlist |
list containing vector '$outputIDs' of sampled IDs (returned by [run_TS()]). |
seq_file |
character string with the path to the multifasta file containing the input sequences. |
verbose |
logical: regulates function echoing to console. |
Value
Updated 'taxlist' containing field 'outputSeqs', a data frame with information on the sampled sequences.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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