extract_taxlevel: Extract the desired ancestry level of a list of taxonomy IDs

In fcampelo/TaxonSampling: Hierarchical Taxonomic Sampling for Maximized Diversity at All Levels

Description

Extract the desired ancestry level of a list of taxonomy IDs

Usage

extract_taxlevel(taxIDs, taxlevel, nodes)

Arguments

taxIDs	vector of taxonomy IDs of interest
taxlevel	desired taxonomic level to be extracted (e.g., '"order"')
nodes	data.frame containing the pre-processed information about the NCBI taxonomy structure. This can be generated, e.g., by using [get_counts()], or as object '$nodes' of a 'taxonsampling' object.

Value

Data frame containing the taxonomy IDs of interest and a column with the corresponding taxonomy IDs of their desired ancestry level.

fcampelo/TaxonSampling documentation built on Jan. 29, 2022, 7:11 a.m.