Files in fcampelo/TaxonSampling
Hierarchical Taxonomic Sampling for Maximized Diversity at All Levels
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
NAMESPACE
R/extract_sequences.R
R/extract_taxlevel.R
R/get_counts.R
R/get_summary_df.R
R/get_taxID_spp_counts.R
R/mc_setup.R
R/plot_taxonsampling.R
R/process_ignoreIDs.R
R/process_requireIDs.R
R/retrieve_NCBI_taxonomy.R
R/retrieve_data_files.R
R/run_TS.R
R/sample_a_b_n.R
R/sample_a_b_y.R
R/sample_a_d_a.R
R/sample_a_d_n.R
R/sample_a_d_y.R
R/sample_k_b_n.R
R/sample_k_b_y.R
R/sample_k_d_a.R
R/sample_k_d_n.R
R/sample_k_d_y.R
R/summary_taxonsampling.R
R/ts_recursive.R
TaxonSampling.Rproj
data/data.zip
inst/utils/convert_format.pl
inst/utils/create_taxonid_2_sequenceid.pl
inst/utils/get_random_lines.pl
inst/utils/get_seqs_species_from_gb.pl
inst/utils/install_NCBI_Taxonomy.sh
inst/utils/test.R
inst/utils/test_loop.R
man/extract_sequences.Rd
man/extract_taxlevel.Rd
man/get_counts.Rd
man/get_summary_df.Rd
man/get_taxID_spp_counts.Rd
man/plot.taxonsampling.Rd
man/retrieve_NCBI_taxonomy.Rd
man/retrieve_data_files.Rd
man/run_TS.Rd
man/summary.taxonsampling.Rd
tmp/bin/TaxonSampling/Eval.R
tmp/bin/TaxonSampling/Eval_diversity.R
tmp/bin/TaxonSampling/Eval_diversity_ag_ks.R
tmp/bin/TaxonSampling/Eval_diversity_mammalia.R
tmp/bin/TaxonSampling/TaxonSampling.R
tmp/bin/TaxonSampling/pseudocode
tmp/bin/TaxonSampling/pseudocode_2.0
tmp/bin/TaxonSampling/utils/convert_format.pl
tmp/bin/TaxonSampling/utils/create_taxonid_2_sequenceid.pl
tmp/bin/TaxonSampling/utils/get_random_lines.pl
tmp/bin/TaxonSampling/utils/get_seqs_species_from_gb.pl
tmp/install_NCBI_Taxonomy.sh
tmp/runTS.R
