Man pages for fcampelo/TaxonSampling
Hierarchical Taxonomic Sampling for Maximized Diversity at All Levels

extract_sequencesWrite sequences associated with sampled IDs to a multifasta...
get_countsReturn the relevant counts for running TaxonSampling
get_summary_dfGenerate a summary dataframe from the result of run_TS
get_taxID_spp_countsCount number of species under each taxonomy ID
plot.taxonsamplingplot.taxonsampling
retrieve_data_filesRetrieve data files from the Github repository
retrieve_NCBI_taxonomyRetrieve NCBI taxonomy file from public database
run_TSRun Taxon Sampling
summary.taxonsamplingsummary.taxonsampling
fcampelo/TaxonSampling documentation built on Jan. 14, 2022, 9:42 p.m.