get_exprin_app: A Function That runs Heatmap App

View source: R/exprin.R

get_exprin_appR Documentation

A Function That runs Heatmap App

Description

This function runs heatmap app.

Usage

get_exprin_app(studies, gene_symbols, height = "5000",
  var = c("samples", "raw", "genome"), USE_CLUST = c(TRUE, FALSE),
  kern_dim = 1, ALL_CURVE = FALSE, nb_clust = 3,
  pf_col_label = "exo", exp_grp_col = "tissue_status",
  exp_grp_col_label, second, BREAK_TOO_EXPENSIVE = BREAK_TOO_EXPENSIVE,
  ...)

Arguments

height

string specifying the height oh the app

var

A vector defining the distances used to cluster data

USE_CLUST

A boolean specifying if dendogram needs to be plotted

kern_dim

the size of the kernel used to smooth RNAseq signal

ALL_CURVE

A boolean specifying if individual RNAseq signal needs to be plotted

nb_clust

An interger specifying the number of cluster

pf_col_label

A platform column name use to label gene axis

exp_grp_col

An exp_grp column name use to label sample

exp_grp_col_label

exprimental

second

exprimental

BREAK_TOO_EXPENSIVE

A boolean specifying if too expensive operation must be breaked.

...

argument passed to plot_rna_sig function

study

An epimedtools Study RC object


fchuffar/epimedtools documentation built on Feb. 3, 2024, 2:21 a.m.