plot_volcano: A Function That Draws a Volcano Plot
| plot_volcano | R Documentation |
A Function That Draws a Volcano Plot
Description
This function draws volcano plot, logratio vs. p-value.
Usage
plot_volcano(res_key_lr, res_key_pval, anova_mw_res, fc_thres = c(-1.5,
-1.2, 1.2, 1.5), pval_thres = 0.05, legend_place = "bottomright",
LEGEND = TRUE, ...)
Arguments
res_key_lr |
the column name of the result dataframe to considere as logratio |
res_key_pval |
the column name of the result dataframe to considere as logratio |
anova_mw_res |
A dataframe with ANOVA and Mann-Whitney results |
fc_thres |
A vector of integer corresponding to the foldchange thresholds |
pval_thres |
An integer corresponding to the p-value thresholds |
legend_place |
A character string to specify where to put the legend |
LEGEND |
A boolean to specifying if legend need to be plotted |
... |
Parameters passed to plot function |
