plot_volcano: A Function That Draws a Volcano Plot

In fchuffar/epimedtools: Useful Tools Allowing Multi-Omics Analysis

A Function That Draws a Volcano Plot

Description

This function draws volcano plot, logratio vs. p-value.

Usage

plot_volcano(res_key_lr, res_key_pval, anova_mw_res, fc_thres = c(-1.5,
  -1.2, 1.2, 1.5), pval_thres = 0.05, legend_place = "bottomright",
  LEGEND = TRUE, ...)

Arguments

res_key_lr	the column name of the result dataframe to considere as logratio
res_key_pval	the column name of the result dataframe to considere as logratio
anova_mw_res	A dataframe with ANOVA and Mann-Whitney results
fc_thres	A vector of integer corresponding to the foldchange thresholds
pval_thres	An integer corresponding to the p-value thresholds
legend_place	A character string to specify where to put the legend
LEGEND	A boolean to specifying if legend need to be plotted
...	Parameters passed to plot function

fchuffar/epimedtools documentation built on Feb. 3, 2024, 2:21 a.m.