get_hm_app: A Function That runs Heatmap App

In fchuffar/epimedtools: Useful Tools Allowing Multi-Omics Analysis

A Function That runs Heatmap App

Description

This function runs heatmap app.

Usage

get_hm_app(study, height = "5000", var = c("samples", "raw", "genome"),
  USE_CLUST = c(TRUE, FALSE), kern_dim = 1, ALL_CURVE = FALSE,
  nb_clust = 3, pf_col_label = "exon", exp_grp_col = "histo",
  exp_grp_col_label, second, BREAK_TOO_EXPENSIVE = BREAK_TOO_EXPENSIVE,
  ...)

Arguments

study	An epimedtools Study RC object
height	string specifying the height oh the app
var	A vector defining the distances used to cluster data
USE_CLUST	A boolean specifying if dendogram needs to be plotted
kern_dim	the size of the kernel used to smooth RNAseq signal
ALL_CURVE	A boolean specifying if individual RNAseq signal needs to be plotted
nb_clust	An interger specifying the number of cluster
pf_col_label	A platform column name use to label gene axis
exp_grp_col	An exp_grp column name use to label sample
exp_grp_col_label	exprimental
second	exprimental
BREAK_TOO_EXPENSIVE	A boolean specifying if too expensive operation must be breaked.
...	argument passed to plot_rna_sig function

fchuffar/epimedtools documentation built on Feb. 3, 2024, 2:21 a.m.