FilteredFusionAnnoFuse: FilteredFusionAnnoFuse.tsv

FilteredFusionAnnoFuseR Documentation

FilteredFusionAnnoFuse.tsv

Description

The exemplary output from the annoFuse workflow, containing a list of filtered fusions, stored as tab-separated text file. 22101 observations are included, with details about 25 different features ( see details below).

Format

When read in via read.delim, the following information is available:

  • LeftBreakpoint: TODO

  • RightBreakpoint: TODO

  • FusionName: TODO

  • Sample: TODO

  • Caller: TODO

  • Fusion_Type: TODO

  • JunctionReadCount: TODO

  • SpanningFragCount: TODO

  • Confidence: TODO

  • annots: TODO

  • Gene1A: TODO

  • Gene2A: TODO

  • Gene1B: TODO

  • Gene2B: TODO

  • BreakpointLocation: TODO

  • SpanningDelta: TODO

  • reciprocal_exists: TODO

  • Gene1A_anno: TODO

  • Gene1B_anno: TODO

  • Gene2A_anno: TODO

  • Gene2B_anno: TODO

  • Fusion_anno: TODO

  • integrated_diagnosis: TODO

  • broad_histology: TODO

  • Kids_First_Participant_ID: TODO

Details

This file is obtained from Star-Fusion, arriba and the rsem expression (fpkm) files from release-v16-20200320 of OpenPBTA


federicomarini/annoFuseData documentation built on Sept. 12, 2022, 11:16 a.m.