FilteredFusionAnnoFuse: FilteredFusionAnnoFuse.tsv

In federicomarini/annoFuseData: Data Package for the annoFuse Bioconductor Package

FilteredFusionAnnoFuse.tsv

Description

The exemplary output from the annoFuse workflow, containing a list of filtered fusions, stored as tab-separated text file. 22101 observations are included, with details about 25 different features ( see details below).

Format

When read in via read.delim, the following information is available:

• LeftBreakpoint: TODO

• RightBreakpoint: TODO

• FusionName: TODO

• Sample: TODO

• Caller: TODO

• Fusion_Type: TODO

• JunctionReadCount: TODO

• SpanningFragCount: TODO

• Confidence: TODO

• annots: TODO

• Gene1A: TODO

• Gene2A: TODO

• Gene1B: TODO

• Gene2B: TODO

• BreakpointLocation: TODO

• SpanningDelta: TODO

• reciprocal_exists: TODO

• Gene1A_anno: TODO

• Gene1B_anno: TODO

• Gene2A_anno: TODO

• Gene2B_anno: TODO

• Fusion_anno: TODO

• integrated_diagnosis: TODO

• broad_histology: TODO

• Kids_First_Participant_ID: TODO

Details

This file is obtained from Star-Fusion, arriba and the rsem expression (fpkm) files from release-v16-20200320 of OpenPBTA

federicomarini/annoFuseData documentation built on Feb. 19, 2023, 1:39 p.m.