arriba_example: arriba_example.tsv

In federicomarini/annoFuseData: Data Package for the annoFuse Bioconductor Package

arriba_example.tsv

Description

detailed desc: TODO 25 rows are included, with details about 27 different features (see details below).

Format

When read in via read.delim, the following information is available:

• X.gene1: TODO - TODO: check if this is indeed the way it is supposed to be read in (if not, we would need to add a dependency to the data package as well)

• gene2: TODO

• strand1.gene.fusion.: TODO

• strand2.gene.fusion.: TODO

• breakpoint1: TODO

• breakpoint2: TODO

• site1: TODO

• site2: TODO

• type: TODO

• direction1: TODO

• direction2: TODO

• split_reads1: TODO

• split_reads2: TODO

• discordant_mates: TODO

• coverage1: TODO

• coverage2: TODO

• confidence: TODO

• closest_genomic_breakpoint1: TODO

• closest_genomic_breakpoint2: TODO

• filters: TODO

• fusion_transcript: TODO

• reading_frame: TODO

• peptide_sequence: TODO

• read_identifiers: TODO

• tumor_id: TODO

• gene1..gene2: TODO

• annots: TODO

federicomarini/annoFuseData documentation built on Feb. 19, 2023, 1:39 p.m.