arriba_example: arriba_example.tsv

arriba_exampleR Documentation

arriba_example.tsv

Description

detailed desc: TODO 25 rows are included, with details about 27 different features (see details below).

Format

When read in via read.delim, the following information is available:

  • X.gene1: TODO - TODO: check if this is indeed the way it is supposed to be read in (if not, we would need to add a dependency to the data package as well)

  • gene2: TODO

  • strand1.gene.fusion.: TODO

  • strand2.gene.fusion.: TODO

  • breakpoint1: TODO

  • breakpoint2: TODO

  • site1: TODO

  • site2: TODO

  • type: TODO

  • direction1: TODO

  • direction2: TODO

  • split_reads1: TODO

  • split_reads2: TODO

  • discordant_mates: TODO

  • coverage1: TODO

  • coverage2: TODO

  • confidence: TODO

  • closest_genomic_breakpoint1: TODO

  • closest_genomic_breakpoint2: TODO

  • filters: TODO

  • fusion_transcript: TODO

  • reading_frame: TODO

  • peptide_sequence: TODO

  • read_identifiers: TODO

  • tumor_id: TODO

  • gene1..gene2: TODO

  • annots: TODO


federicomarini/annoFuseData documentation built on Aug. 3, 2024, 4:48 p.m.