starfusion_example: starfusion_example.tsv

starfusion_exampleR Documentation

starfusion_example.tsv

Description

detailed desc One row of the typical output file from STAR-fusion (version TODO)

Format

When read in via read.delim, the following information is available:

  • X.FusionName

  • JunctionReadCount

  • SpanningFragCount

  • SpliceType

  • LeftGene

  • LeftBreakpoint

  • RightGene

  • RightBreakpoint

  • LargeAnchorSupport

  • FFPM

  • LeftBreakDinuc

  • LeftBreakEntropy

  • RightBreakDinuc

  • RightBreakEntropy

  • annots

  • CDS_LEFT_ID

  • CDS_LEFT_RANGE

  • CDS_RIGHT_ID

  • CDS_RIGHT_RANGE

  • PROT_FUSION_TYPE

  • FUSION_MODEL

  • FUSION_CDS

  • FUSION_TRANSL

  • PFAM_LEFT

  • PFAM_RIGHT

  • tumor_id

References

if any


federicomarini/annoFuseData documentation built on Aug. 3, 2024, 4:48 p.m.