Man pages for ferygood/twice
A collections of useful functions to analyze transcription factors and transposable elements data
| chimpCorrResult | Chimpanzee correlations result from TEKRABber |
| ensIDtoName | convert the ensID in row to gene name for heatmap... |
| hg19age | hg19 information including age inference |
| hg19rmsk_gtf | Coordinates information of hg19 repeatmasker reference |
| hg19rmsk_info | human hg19 repeatmasker annotation file |
| hg38age | hg38 information including age inference |
| hmchimpGene | Gene Expression data of human and chimpanzee |
| hmchimpTE | Transposable elements (TE) data of human and chimpanzee |
| hmCorrResult | Human correlations result from TEKRABber |
| hmKZNFs337 | Human KRAB-Zinc-Finger gene reference data |
| KZNFs423 | Information of human 423 KRAB-ZNFs gene |
| kznfsComplexHeatmap | Use ComplexHeatmap to visualize KZNFs data from TEKRABber... |
| kznfsTEsNetwork | Generate KRAB-ZNFs and TEs regulatory network |
| kznfsTEsPairs | Integrate correlation pairs of KZNFs and TEs |
| pieTE | Abundance of TEs using pie chart in class levels |
| primateGRFs | Positive selections of primates GRFs |
| resHmChimpGene | Differentially expressed genes comparing human and chimpanzee |
| resHmChimpTE | Differentially expressed TEs comparing human and chimpanzee |
| rmskFilter | Filter transposable elements from rmsk reference based on... |
| saveTErmsk | extract the gene/family/class TE information from... |
| teComplexHeatmap | Use ComplexHeatmap to visualize TEs data from TEKRABber... |
| volGeneTE | Gene and TEs volcano plot function |
