saveTErmsk: extract the gene/family/class TE information from...
In ferygood/twice: A collections of useful functions to analyze transcription factors and transposable elements data
saveTErmsk R Documentation
extract the gene/family/class TE information from repeatmasker gtf
Description
to extract TE id/family/class information and to prepare data
for visualize the abundance of TEs using pie chart (refer to pieTE())
Usage
saveTErmsk(rmskGTF, fileName = FALSE)
Arguments
rmskGTF
/path/filename of your transposable element rmsk gtf
fileName
provide file name if you want to save your result instead of
just returning it.
Value
a TE reference dataframe include gene_id, family_id and class_id
ferygood/twice documentation built on May 4, 2023, 11:26 p.m.
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| saveTErmsk | R Documentation |
extract the gene/family/class TE information from repeatmasker gtf
Description
to extract TE id/family/class information and to prepare data for visualize the abundance of TEs using pie chart (refer to pieTE())
Usage
saveTErmsk(rmskGTF, fileName = FALSE)
Arguments
rmskGTF |
/path/filename of your transposable element rmsk gtf |
fileName |
provide file name if you want to save your result instead of just returning it. |
Value
a TE reference dataframe include gene_id, family_id and class_id
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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