ensIDtoName: convert the ensID in row to gene name for heatmap...
In ferygood/twice: A collections of useful functions to analyze transcription factors and transposable elements data
ensIDtoName R Documentation
convert the ensID in row to gene name for heatmap visualization
Description
'ensIDtoName' convert ensembl ID to gene name for more human
readibility. It takes a dataframe or matrix with ensembl gene ID as row
names and then convert them to common gene name. The default species name is
hsapiens. You can also specify the name of species you are interested in.
There are some situation you will face duplicated row names after convert.
Therefore, please consider first subset the data before conversion.
Usage
ensIDtoName(df, species = "hsapiens")
Arguments
df
a dataframe which has ensembl ID as row names
species
the scientific abbreviation name of a species, such as
hsapiens for homo sapiens (human). The default is hsapiens.
Value
a dataframe(matrix) with gene name in row names
Examples
data(hmchimpGene)
data(hmKZNFs337)
dfKZNFs <-
hmchimpGene[rownames(hmchimpGene) %in% hmKZNFs337$ensembl_gene_id, ]
df <- ensIDtoName(dfKZNFs, "hsapiens")
ferygood/twice documentation built on May 4, 2023, 11:26 p.m.
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| ensIDtoName | R Documentation |
convert the ensID in row to gene name for heatmap visualization
Description
'ensIDtoName' convert ensembl ID to gene name for more human readibility. It takes a dataframe or matrix with ensembl gene ID as row names and then convert them to common gene name. The default species name is hsapiens. You can also specify the name of species you are interested in. There are some situation you will face duplicated row names after convert. Therefore, please consider first subset the data before conversion.
Usage
ensIDtoName(df, species = "hsapiens")
Arguments
df |
a dataframe which has ensembl ID as row names |
species |
the scientific abbreviation name of a species, such as hsapiens for homo sapiens (human). The default is hsapiens. |
Value
a dataframe(matrix) with gene name in row names
Examples
data(hmchimpGene)
data(hmKZNFs337)
dfKZNFs <-
hmchimpGene[rownames(hmchimpGene) %in% hmKZNFs337$ensembl_gene_id, ]
df <- ensIDtoName(dfKZNFs, "hsapiens")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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