kznfsTEsPairs: Integrate correlation pairs of KZNFs and TEs

In ferygood/twice: A collections of useful functions to analyze transcription factors and transposable elements data

Integrate correlation pairs of KZNFs and TEs

Description

This function takes the correlation result from TEKRABber and repeatmasker annotation to integrate a table include positive and negative correlation pairs of KRAB-ZNFs and TEs with their TE families and classes information. You can specify filename and title to save as html file or assign to a variable to get the csv file.

Usage

kznfsTEsPairs(df, rmsk, title = NULL, fileName = NULL)

Arguments

df	a correlation result dataframe from TEKRABber
rmsk	a transposable elements repeatmasker annotation
title	title when open html file
fileName	name for saving html files

Value

a KZNFs TEs pairs table

Examples

data(hmCorrResult)
data(hg19rmsk_info)

df <- kznfsTEsPairs(
    hmCorrResult,
    hg19rmsk_info,
    title="human KZNFsTEsPairs",
    fileName="hmKZNFsTEsPairs.html"
)

ferygood/twice documentation built on May 4, 2023, 11:26 p.m.