Files in fintzij/augSIR
Estimation of stochastic SIR epidemic parameters via Bayesian data augmentation.

.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/RcppExports.R R/SIRsimulation.R R/augSIR.R R/auxilliary_functions.R R/matrix_build_update.R R/metropolis_hastings_functions.R R/path_sampling_functions.R R/rjmcmc_functions.R
Read-and-delete-me
Simulation Journal/augSIR_simulations.aux
Simulation Journal/augSIR_simulations.dvi
Simulation Journal/augSIR_simulations.log
Simulation Journal/augSIR_simulations.pdf
Simulation Journal/augSIR_simulations.ps
Simulation Journal/augSIR_simulations.tex
Simulation Journal/corrected_likelihood_8_7_2015.log
Simulation Journal/corrected_likelihood_8_7_2015.tex
Thumbs.db
augSIR.Rproj
augSIR_log_10_0.1_0.1_4_1.txt
augSIR_log_10_0.2_0.1_4_1.txt
code_to_load_packages_on_cluster
log_10_0.1_0.1_4_1.txt
man/augSIR-package.Rd man/rcpp_hello_world.Rd
plots/sim1_BetaMu_b0.005_m0.5_0.98_0.02_0_wpu_noMH_withinit.bmp
plots/sim1_trajecs_b0.005_m0.5_0.98_0.02_0_wpu_noMH_withinit.bmp
plots/sim2_trajecs_b0.005_m0.5_0.995_0.005_0_wpu_noMH_withinit.bmp
plots/sim3_BetaMu_b0.008_m1.2_0.995_0.005_0_wpu_noMH_withinit.bmp
plots/sim3_Mu_b0.008_m1.2_0.995_0.005_0_wpu_noMH_withinit.bmp
plots/sim3_beta_b0.008_m1.2_0.995_0.005_0_wpu_noMH_withinit.bmp
plots/sim3_loglike_b0.008_m1.2_0.995_0.005_0_wpu_noMH_withinit.bmp
plots/sim3_trajecs_b0.008_m1.2_0.995_0.005_0_wpu_noMH_withinit.bmp
plots/sim_1_Beta_b0.005_m0.5_0.98_0.02_0_wpu_noMH_withinit.bmp
plots/sim_1_Mu_b0.005_m0.5_0.98_0.02_0_wpu_noMH_withinit.bmp
plots/sim_1_binomprob_b0.005_m0.5_0.98_0.02_0_wpu_noMH_withinit.bmp
plots/sim_1_loglike_b0.005_m0.5_0.98_0.02_0_wpu_noMH_withinit.bmp
plots/sim_2_BetaMu_b0.005_m0.5_0.995_0.005_0_wpu_noMH_withinit.bmp
plots/sim_2_Beta_b0.005_m0.5_0.995_0.005_0_wpu_noMH_withinit.bmp
plots/sim_2_Mu_b0.005_m0.5_0.995_0.005_0_wpu_noMH_withinit.bmp
plots/sim_2_loglike_b0.005_m0.5_0.995_0.005_0_wpu_noMH_withinit.bmp
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__200_0.05_0.1_4_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__200_0.05_0.1_8_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__200_0.05_0.4_4_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__200_0.05_0.4_8_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__200_0.2_0.1_4_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__200_0.2_0.1_8_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__200_0.2_0.4_4_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__200_0.2_0.4_8_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__200_0.4_0.1_4_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__200_0.4_0.1_8_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__200_0.4_0.4_4_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__200_0.4_0.4_8_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__500_0.05_0.1_4_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__500_0.05_0.1_8_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__500_0.05_0.4_4_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__500_0.05_0.4_8_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__500_0.2_0.1_4_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__500_0.2_0.1_8_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__500_0.2_0.4_4_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__500_0.2_0.4_8_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__500_0.4_0.1_4_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__500_0.4_0.1_8_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__500_0.4_0.4_4_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__500_0.4_0.4_8_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__50_0.05_0.1_4_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__50_0.05_0.1_8_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__50_0.05_0.4_4_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__50_0.05_0.4_8_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__50_0.2_0.1_4_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__50_0.2_0.1_8_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__50_0.2_0.4_4_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__50_0.2_0.4_8_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__50_0.4_0.1_4_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__50_0.4_0.1_8_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__50_0.4_0.4_4_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Data/augSIR__50_0.4_0.4_8_1.Rdata
tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__200_0.05_0.1_4_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__200_0.05_0.1_8_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__200_0.05_0.4_4_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__200_0.05_0.4_8_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__200_0.2_0.1_4_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__200_0.2_0.1_8_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__200_0.2_0.4_4_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__200_0.2_0.4_8_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__200_0.4_0.1_4_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__200_0.4_0.1_8_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__200_0.4_0.4_4_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__200_0.4_0.4_8_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__500_0.05_0.1_4_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__500_0.05_0.1_8_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__500_0.05_0.4_4_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__500_0.05_0.4_8_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__500_0.2_0.1_4_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__500_0.2_0.1_8_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__500_0.2_0.4_4_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__500_0.2_0.4_8_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__500_0.4_0.1_4_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__500_0.4_0.1_8_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__500_0.4_0.4_4_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__500_0.4_0.4_8_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__50_0.05_0.1_4_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__50_0.05_0.1_8_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__50_0.05_0.4_4_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__50_0.05_0.4_8_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__50_0.2_0.1_4_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__50_0.2_0.1_8_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__50_0.2_0.4_4_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__50_0.2_0.4_8_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__50_0.4_0.1_4_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__50_0.4_0.1_8_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__50_0.4_0.4_4_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/Plots/augSIR__50_0.4_0.4_8_plot.pdf tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/convcomp_augSIR_reparMH.R tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/convcomp_stats_batch_reparMH.R tests/Experiments/Experiment series 1 - popsize_sampprob_censusInterval_R0_8_7_2015/process_exper1_results.R tests/Experiments/Experiment series 2 - Geweke simulations_fixed parameters_8_7_2015/convcomp_augSIR_geweke.R tests/Experiments/Experiment series 2 - Geweke simulations_fixed parameters_8_7_2015/convcomp_stats_batch_geweke.R
tests/TESTS WITH WRONG LIKELIHOOD/augSIR simulation journal - bad likelihood simulations/7_30_2015_fixed_params.tex
tests/TESTS WITH WRONG LIKELIHOOD/augSIR simulation journal - bad likelihood simulations/7_30_2015_reparameterized_model.log
tests/TESTS WITH WRONG LIKELIHOOD/augSIR simulation journal - bad likelihood simulations/7_30_2015_reparameterized_model.tex
tests/TESTS WITH WRONG LIKELIHOOD/augSIR simulation journal - bad likelihood simulations/Convergence experiment - populations size_/& binomial probability vs. mixing.tex
tests/TESTS WITH WRONG LIKELIHOOD/augSIR simulation journal - bad likelihood simulations/augSIR_simulations.aux
tests/TESTS WITH WRONG LIKELIHOOD/augSIR simulation journal - bad likelihood simulations/augSIR_simulations.dvi
tests/TESTS WITH WRONG LIKELIHOOD/augSIR simulation journal - bad likelihood simulations/augSIR_simulations.log
tests/TESTS WITH WRONG LIKELIHOOD/augSIR simulation journal - bad likelihood simulations/augSIR_simulations.pdf
tests/TESTS WITH WRONG LIKELIHOOD/augSIR simulation journal - bad likelihood simulations/augSIR_simulations.ps
tests/TESTS WITH WRONG LIKELIHOOD/augSIR simulation journal - bad likelihood simulations/exper_7_25_2015.tex
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_augSIR.R tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_augSIR_250_0.2_0.5_1_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_augSIR_250_0.2_0.5_1_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_augSIR_250_0.2_0.5_1_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_augSIR_25_0.2_0.5_1_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_augSIR_25_0.2_0.5_1_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_augSIR_25_0.2_0.5_1_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_augSIR_500_0.2_0.5_1_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_augSIR_500_0.2_0.5_1_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_augSIR_500_0.2_0.5_1_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_augSIR_50_0.2_0.5_1_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_augSIR_50_0.2_0.5_1_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_augSIR_50_0.2_0.5_1_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_rjmcmc_1000_0.2_0.5_1_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_rjmcmc_1000_0.2_0.5_1_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_rjmcmc_1000_0.2_0.5_1_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_rjmcmc_100_0.2_0.5_1_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_rjmcmc_100_0.2_0.5_1_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_rjmcmc_100_0.2_0.5_1_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_rjmcmc_250_0.2_0.5_1_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_rjmcmc_250_0.2_0.5_1_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_rjmcmc_250_0.2_0.5_1_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_rjmcmc_25_0.2_0.5_1_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_rjmcmc_25_0.2_0.5_1_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_rjmcmc_500_0.2_0.5_1_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_rjmcmc_500_0.2_0.5_1_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_rjmcmc_500_0.2_0.5_1_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_rjmcmc_50_0.2_0.5_1_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_rjmcmc_50_0.2_0.5_1_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_plots_rjmcmc_50_0.2_0.5_1_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_rjmcmc.R
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_rjmcmc.sh
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 1 - effect of population size - augSIR vs rjmcmc/convcomp_stats_batch.R
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/Thumbs.db
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/convcomp_augSIR.R tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/convcomp_popsize_accepts.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/convcomp_popsize_results.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/convcomp_stats_batch.R tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/plots/convcomp_plots_augSIR_100_0.2_0.05_10_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/plots/convcomp_plots_augSIR_100_0.2_0.05_10_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/plots/convcomp_plots_augSIR_100_0.2_0.05_10_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/plots/convcomp_plots_augSIR_100_0.2_0.05_2_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/plots/convcomp_plots_augSIR_100_0.2_0.05_2_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/plots/convcomp_plots_augSIR_100_0.2_0.05_2_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/plots/convcomp_plots_augSIR_100_0.2_0.05_5_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/plots/convcomp_plots_augSIR_100_0.2_0.05_5_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - 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tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__500_0.2_0.5_2_1.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__500_0.2_0.5_2_2.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__500_0.2_0.5_2_3.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__500_0.2_0.5_5_1.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__500_0.2_0.5_5_2.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__500_0.2_0.5_5_3.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.05_10_1.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.05_10_2.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.05_10_3.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.05_2_1.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.05_2_2.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.05_2_3.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.05_5_1.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.05_5_2.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.05_5_3.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.2_10_1.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.2_10_2.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.2_10_3.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.2_2_1.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.2_2_2.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.2_2_3.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.2_5_1.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.2_5_2.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.2_5_3.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.5_10_1.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.5_10_2.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.5_10_3.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.5_2_1.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.5_2_2.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.5_2_3.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.5_5_1.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.5_5_2.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 2 - population size and binomial prob - assessing mixing/results files/augSIR__50_0.2_0.5_5_3.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__200_0.05_10_1.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__200_0.05_10_2.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__200_0.05_10_3.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__200_0.05_5_1.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__200_0.05_5_2.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__200_0.05_5_3.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__200_0.25_10_1.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__200_0.25_10_2.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__200_0.25_10_3.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__200_0.25_5_1.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__200_0.25_5_2.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__200_0.25_5_3.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__500_0.05_10_1.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__500_0.05_10_2.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__500_0.05_10_3.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__500_0.05_5_1.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__500_0.05_5_2.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__500_0.05_5_3.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__500_0.25_10_1.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__500_0.25_10_2.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__500_0.25_10_3.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__500_0.25_5_1.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__500_0.25_5_2.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__500_0.25_5_3.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__50_0.05_10_1.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__50_0.05_10_2.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__50_0.05_10_3.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__50_0.05_5_1.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__50_0.05_5_2.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__50_0.05_5_3.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__50_0.25_10_1.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__50_0.25_10_2.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__50_0.25_10_3.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__50_0.25_5_1.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__50_0.25_5_2.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/censusInterval_0.2/Results data/augSIR__50_0.25_5_3.Rdata
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/convcomp_augSIR.R tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/convcomp_stats_batch.R tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 3 - population size vs. mixing with fixed parameters/process_exper2_results.R
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/MCMC procedure description/description.tex
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/MCMC procedure description/mcmc_descrip_reparam.aux
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/MCMC procedure description/mcmc_descrip_reparam.dvi
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/MCMC procedure description/mcmc_descrip_reparam.log
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/MCMC procedure description/mcmc_descrip_reparam.pdf
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/MCMC procedure description/mcmc_descrip_reparam.ps
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/MCMC procedure description/mcmc_descrip_reparam.tex
tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_150_0.05_0.1_4_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_150_0.05_0.1_4_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_150_0.05_0.1_4_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_150_0.05_0.1_8_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_150_0.05_0.1_8_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_150_0.05_0.1_8_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_150_0.05_0.4_4_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_150_0.05_0.4_4_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_150_0.05_0.4_4_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_150_0.05_0.4_8_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_150_0.05_0.4_8_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_150_0.05_0.4_8_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_150_0.2_0.1_4_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_150_0.2_0.1_4_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_150_0.2_0.1_4_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_150_0.2_0.1_8_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_150_0.2_0.1_8_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_150_0.2_0.1_8_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_150_0.2_0.4_4_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_150_0.2_0.4_4_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_150_0.2_0.4_4_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_150_0.2_0.4_8_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_150_0.2_0.4_8_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_150_0.2_0.4_8_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_300_0.05_0.1_4_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_300_0.05_0.1_4_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_300_0.05_0.1_4_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_300_0.05_0.1_8_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_300_0.05_0.1_8_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_300_0.05_0.1_8_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_300_0.05_0.4_4_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_300_0.05_0.4_4_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_300_0.05_0.4_4_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_300_0.05_0.4_8_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_300_0.05_0.4_8_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_300_0.05_0.4_8_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_300_0.2_0.1_4_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_300_0.2_0.1_4_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_300_0.2_0.1_4_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_300_0.2_0.1_8_1.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_300_0.2_0.1_8_2.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - reparameterized model/Plots/convcomp_plots_augSIR_300_0.2_0.1_8_3.pdf tests/TESTS WITH WRONG LIKELIHOOD/convergence_comp/Experiment series 4 - 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tests/convergence_comp/Experiment series 6 - Geweke test/Data files/augSIR__20_1_0.4_4_1.Rdata
tests/convergence_comp/Experiment series 6 - Geweke test/Data files/augSIR__20_1_0.4_8_1.Rdata
tests/convergence_comp/Experiment series 6 - Geweke test/Plots/convcomp_plots_augSIR_10_0.05_0.4_4_1.pdf tests/convergence_comp/Experiment series 6 - Geweke test/Plots/convcomp_plots_augSIR_10_0.05_0.4_8_1.pdf tests/convergence_comp/Experiment series 6 - Geweke test/Plots/convcomp_plots_augSIR_10_0.2_0.4_4_1.pdf tests/convergence_comp/Experiment series 6 - Geweke test/Plots/convcomp_plots_augSIR_10_0.2_0.4_8_1.pdf tests/convergence_comp/Experiment series 6 - Geweke test/Plots/convcomp_plots_augSIR_10_0.5_0.4_4_1.pdf tests/convergence_comp/Experiment series 6 - Geweke test/Plots/convcomp_plots_augSIR_10_0.5_0.4_8_1.pdf tests/convergence_comp/Experiment series 6 - Geweke test/Plots/convcomp_plots_augSIR_10_1_0.4_4_1.pdf tests/convergence_comp/Experiment series 6 - Geweke test/Plots/convcomp_plots_augSIR_10_1_0.4_8_1.pdf tests/convergence_comp/Experiment series 6 - Geweke test/Plots/convcomp_plots_augSIR_20_0.05_0.4_4_1.pdf tests/convergence_comp/Experiment series 6 - Geweke test/Plots/convcomp_plots_augSIR_20_0.05_0.4_8_1.pdf tests/convergence_comp/Experiment series 6 - Geweke test/Plots/convcomp_plots_augSIR_20_0.2_0.4_4_1.pdf tests/convergence_comp/Experiment series 6 - Geweke test/Plots/convcomp_plots_augSIR_20_0.2_0.4_8_1.pdf tests/convergence_comp/Experiment series 6 - Geweke test/Plots/convcomp_plots_augSIR_20_0.5_0.4_4_1.pdf tests/convergence_comp/Experiment series 6 - Geweke test/Plots/convcomp_plots_augSIR_20_0.5_0.4_8_1.pdf tests/convergence_comp/Experiment series 6 - Geweke test/Plots/convcomp_plots_augSIR_20_1_0.4_4_1.pdf tests/convergence_comp/Experiment series 6 - Geweke test/Plots/convcomp_plots_augSIR_20_1_0.4_8_1.pdf tests/convergence_comp/Experiment series 6 - Geweke test/process_exper6_results.R
tests/convergence_comp/convcomp.sh
tests/convergence_comp/convcomp_augSIR.R tests/convergence_comp/convcomp_rjmcmc.R
tests/convergence_comp/convcomp_rjmcmc.sh
tests/convergence_comp/convcomp_rjmcmc_cluster_code.R
tests/convergence_comp/convcomp_run.sh
tests/convergence_comp/convcomp_stats_batch.R
tests/convergence_comp/convcomp_statsclust_run.sh
tests/eval.R tests/gibbsupdate_comparison.R
tests/jointdist_comparisons/infecprob_demeaned_sim1.png
tests/jointdist_comparisons/infecprob_demeaned_sim3.png
tests/jointdist_comparisons/infecprob_demeaned_sim4.png
tests/jointdist_comparisons/infecprob_sim1.png
tests/jointdist_comparisons/infecprob_sim3.png
tests/jointdist_comparisons/infecprob_sim4.png
tests/jointdist_comparisons/jointcomp.aux
tests/jointdist_comparisons/jointcomp.log
tests/jointdist_comparisons/jointcomp.pdf
tests/jointdist_comparisons/jointcomp.synctex.gz
tests/jointdist_comparisons/jointcomp.tex
tests/jointdist_comparisons/jointcomp_rjmcmc.R
tests/jointdist_comparisons/jointcomp_run.sh
tests/jointdist_comparisons/jointcomp_sim1.R
tests/jointdist_comparisons/jointcomp_sim1.sh
tests/jointdist_comparisons/jointcomp_sim2.R
tests/jointdist_comparisons/jointcomp_sim2.sh
tests/jointdist_comparisons/jointcomp_sim3.R
tests/jointdist_comparisons/jointcomp_sim3.sh
tests/jointdist_comparisons/jointcomp_sim4.R
tests/jointdist_comparisons/jointcomp_sim4.sh
tests/jointdist_comparisons/jointcomp_sim5.R
tests/jointdist_comparisons/jointcomp_sim5.sh
tests/jointdist_comparisons/jointcomp_sim6.R
tests/jointdist_comparisons/jointcomp_sim6.sh
tests/paramsim.R tests/pomp_comparison.R tests/pomp_intro.R
tests/profile/Rprof.out
tests/profile/augSIRprofile.out
tests/profile/augSIRprofile.pdf tests/profile/profile2.pdf
tests/results2.Rdata
tests/rjmcmc comparison/Thumbs.db
tests/rjmcmc comparison/augSIR_loglikelihood.png
tests/rjmcmc comparison/augSIR_rjmcmc_comp.png
tests/rjmcmc comparison/augSIR_trajecs.png
tests/rjmcmc comparison/rjmcmc.sh
tests/rjmcmc comparison/rjmcmc_cluster_code.R
tests/rjmcmc comparison/rjmcmc_loglikelihood.png
tests/rjmcmc comparison/rjmcmc_run.sh
tests/rjmcmc comparison/rjmcmc_trajecs.png
tests/rjmcmc_augSIR_jointcomp.R tests/rjmcmc_cluster_code.R tests/rjmcmc_comp.R tests/sample_calls.R tests/sample_calls[Conflict].R tests/sim_one_check.R tests/sim_recoveries.R tests/smallpop.R tests/testfb.R tests/testfb2.R tests/trajsim.R
fintzij/augSIR documentation built on May 14, 2017, 1:19 a.m.