inventoryFromData: Create inventory

In fischer-fjd/RconTroll: Package for individual-based forest growth simulator TROLL (wip)

Description

Virtualize a forest inventory in forest text file to initialize TROLL model

Usage

inventoryFromData(forest = getOption("RconTroll.forest"),
  path = getOption("RconTroll.path"), overwrite = FALSE,
  species = read.table(getOption("RconTroll.species"), header = TRUE, dec =
  ".", sep = "", row.names = 1), missing = getOption("RconTroll.missing"),
  spcorrect = TRUE, data, plotcol = "n_parcelle", xcol = "Xutm",
  ycol = "Yutm", censuscol = "campagne", spcol = c("Genre", "espece"),
  dbhcol = "dbh_c", alivecol = "status", NV = 1, NH = 1, plots = c(1),
  year = 1984, alive = 1)

Arguments

forest	int. path to the file to create
path	char. working directory
overwrite	logical. allow to overwrite existing input file
species	df. species trait values (can be open from external file)
missing	(logical, path). missing species should be save and where ?
spcorrect	logical. should species will try to be corrected
data	df. censuses data (can be open from external file)
plotcol	char. name of the column containing plot information
xcol	char. name of the column containing longitude information
ycol	char. name of the column containing latitude information
censuscol	char. name of the column containing census year information
spcol	char. name of the column(s) containing secies information (can be a vector if species and genus are split)
dbhcol	char. name of the column containing dbh information
alivecol	char. name of the column containing alive information
NV	int. vertical number of cells (nb per m)
NH	int. horizontal number of cells (nb per m)
plots	int/char. name or number of the plot to initialize on
year	int. year of the census to intialize on
alive	int/char/logical. code corresponding to alive tree

Value

virtual forest inventory for the TROLL program (forest.txt)

Examples

NA

fischer-fjd/RconTroll documentation built on May 16, 2019, 12:57 p.m.