Files in fischuu/GenomicTools
Collection of Tools for Genomic Data Analysis
.Rbuildignore
.directory
.gitignore
DESCRIPTION
GenomicTools.Rproj
NAMESPACE
R/.directory
R/KEGGfunctions.R
R/QTL.R
R/aaa.R
R/addThis/plotKEGGpathway.R
R/cWrappers.R
R/columnLabels.R
R/diverseFunctions.R
R/eQTL.topResults.R
R/eqtl.R
R/eqtlDir.R
R/eqtlLM.R
R/faFunctions.R
R/genotypePlot.R
R/getDistances.R
R/getRSLocation.R
R/getRegionsOI.R
R/getSNPlocations.R
R/gtfToBed.R
R/joinEQTL.R
R/joinEQTLsig.R
R/makeannotList.R
R/mdr.R
R/mdrEnsemble.R
R/plot.eqtl.R
R/plot.eqtl.trans.R
R/plot.mdr.R
R/plot.qtlRes.R
R/plotGeneLocation.R
R/predict.mdr.R
R/prepare_kegg_hierachy.R
R/print.PedMap.R
R/print.eqtl.R
R/print.mdr.R
R/print.mdrEnsemble.R
R/print.mdrPredict.R
R/print.qtlRes.R
R/print.vcf.R
R/rearrange.R
R/recodeData.R
R/restrictionDigest.R
R/revcomp.R
R/summary.PedMap.R
R/summary.eqtl.R
R/summary.mdr.R
R/summary.qtlRes.R
R/visTrans.R
R/zzz.R
README.md
data/.directory
data/annotTrack.rda
data/geneEXP.rda
data/genotData.rda
data/mdrExample.rda
data/phenoData.rda
inst/CITATION
inst/ChangeLog
man/.directory
man/GenomicTools-package.Rd
man/QTL.Rd
man/annotTrack.Rd
man/eQTL.Rd
man/geneEXP.Rd
man/genotData.Rd
man/getKEGGInformation.Rd
man/getKEGGModule.Rd
man/getKEGGModuleOverview.Rd
man/getKEGGOrganisms.Rd
man/getKEGGOrthologOverview.Rd
man/getKEGGPathway.Rd
man/getKEGGPathwayImage.Rd
man/getKEGGPathwayOverview.Rd
man/getRSLocation.Rd
man/gtfToBed.Rd
man/mdr.Rd
man/mdrEnsemble.Rd
man/mdrExample.Rd
man/phenoData.Rd
man/plot.eqtl.Rd
man/plot.mdr.Rd
man/plot.qtlRes.Rd
man/print.eqtl.Rd
man/print.mdr.Rd
man/recodeData.Rd
man/restrictionDigest.Rd
man/revcomp.Rd
man/seqlength.Rd
man/summary.eqtl.Rd
src/GenomicTools.so
src/Makevars
src/Makevars.win
src/RegisterRoutines.c
src/RegisterRoutines.o
src/mdr.cpp
src/mdr.h
src/mdr.o
src/timeCluster.cpp
src/timeCluster.h
src/timeCluster.o
vignettes/.directory
vignettes/GenomicTools-Vignette.Rmd
vignettes/GenomicTools-Vignette.bib
vignettes/MDR.png
vignettes/QTL1.png
vignettes/QTL2.png
vignettes/cisEQTL.png
vignettes/transEQTL.png
