Man pages for fischuu/GenomicTools
Collection of Tools for Genomic Data Analysis
| annotTrack | Example Annotation Track |
| eQTL | Perform an eQTL Analysis |
| geneEXP | Simulated Expression Data |
| GenomicTools-package | Loose Collection of Expression and Genotype Analysis Tools,... |
| genotData | Simulated Genotype Data |
| getKEGGInformation | Get Information from the KEGG database |
| getKEGGModule | Get module information from the KEGG database |
| getKEGGModuleOverview | Get module overview from the KEGG database |
| getKEGGOrganisms | Get a list of organisms in the KEGG database |
| getKEGGOrthologOverview | Get ortholog overview from the KEGG database |
| getKEGGPathway | Get a list of genes in a specific KEGG pathway. |
| getKEGGPathwayImage | Get a visualization of a specific KEGG pathway. |
| getKEGGPathwayOverview | Get a list of pathways in a specific organism. |
| getRSLocation | Get the location of an SNP. |
| gtfToBed | Extract the Chromosomal Information Required in bed Format... |
| mdr | Perform a MDR. |
| mdrEnsemble | Ensemble Classification Using an Existing MDR Object |
| mdrExample | Example Data for MDR |
| phenoData | Simulated Phenotype Data |
| plot.eqtl | Plot an eqtl Object |
| plot.mdr | Plot an MDR Object |
| plot.qtlRes | Plot an qtlRes Object |
| print.eqtl | Print an eqtl Object |
| print.mdr | Print an mdr Object |
| QTL | Perform a QTL Analysis |
| recodeData | Recode a Genotype Data Matrix. |
| restrictionDigest | Simulate DNA fragmentation with restriction enzymes. |
| revcomp | Get the reverse complement from teh sequence |
| seqlength | Get the sequence length of a fa-object. |
| summary.eqtl | Summarize an eqtl Object |
