recodeData: Recode a Genotype Data Matrix.
In fischuu/GenomicTools: Collection of Tools for Genomic Data Analysis
recodeData R Documentation
Recode a Genotype Data Matrix.
Description
This function recodes a genotype data matrix in a format as expected from eqtl or mdr.
Usage
recodeData(X)
Arguments
X
Matrix with genotype information.
Details
This function recodes the values given in the data matrix X (typically AA, AB and BB) and
substitutes it with 0,1 and 2. Missing values are encoded as 3.
Value
A matrix with same dimension as the input, but in 0,1,2 encoding.
Author(s)
Daniel Fischer
See Also
eQTL , mdr
Examples
# genotData <- read.table("MDR_format_ready_BCR.txt",header=T)
# temp <- recodeData(genotData)
fischuu/GenomicTools documentation built on Feb. 15, 2025, 2:13 p.m.
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| recodeData | R Documentation |
Recode a Genotype Data Matrix.
Description
This function recodes a genotype data matrix in a format as expected from eqtl or mdr.
Usage
recodeData(X)
Arguments
X |
Matrix with genotype information. |
Details
This function recodes the values given in the data matrix X (typically AA, AB and BB) and
substitutes it with 0,1 and 2. Missing values are encoded as 3.
Value
A matrix with same dimension as the input, but in 0,1,2 encoding.
Author(s)
Daniel Fischer
See Also
eQTL , mdr
Examples
# genotData <- read.table("MDR_format_ready_BCR.txt",header=T)
# temp <- recodeData(genotData)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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