annotTrack: Example Annotation Track

In fischuu/GenomicTools: Collection of Tools for Genomic Data Analysis

Example Annotation Track

Description

An example for a typical annotation track.

Usage

data(annotTrack)

Format

A data table with 1000 rows, each representing one annotation with 11 columns as provided from standard gtf format from Ensembl.

Details

This is an example homo sapiens annotation track as it was downloaded from the Ensembl ftp download page. In total there are 1000 annotations from the human genome in release 85.

Value

A data.table

Source

http://www.ensembl.org/info/data/ftp/index.html

Examples

# The object was created from the downloaded Ensembl file as follows
## Not run: 
  ensGTF <- importGTF(file="Homo_sapiens.GRCh38.85.gtf.gz")
  annotTrack <- ensGTF[1:1000,]
  save(annotTrack,file="annotTrack.rda")

## End(Not run)

data(annotTrack)
annotTrack

fischuu/GenomicTools documentation built on April 30, 2023, 7:53 p.m.