extract_ncbi_tabs: Extract Tables from NCBI Output
In fishsciences/metabarcode_utils: Meta-barcoding Utilities
extract_ncbi_tabs R Documentation
Extract Tables from NCBI Output
Description
Extracts the tables from the raw text file output from NCBI.
Usage
extract_ncbi_tabs(
file,
lines = readLines(file),
col_names = c("description", "scientific_name", "common_name", "taxid", "max_score",
"total_score", "query_cover", "e_value", "per_ident", "acc_len", "accession")
)
Arguments
file
file path to NCBI output file
lines
the raw lines of the text file
col_names
character vector of column names to assign
Value
list, with one element per table
Author(s)
Matt Espe
fishsciences/metabarcode_utils documentation built on Feb. 25, 2024, 11:31 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| extract_ncbi_tabs | R Documentation |
Extract Tables from NCBI Output
Description
Extracts the tables from the raw text file output from NCBI.
Usage
extract_ncbi_tabs(
file,
lines = readLines(file),
col_names = c("description", "scientific_name", "common_name", "taxid", "max_score",
"total_score", "query_cover", "e_value", "per_ident", "acc_len", "accession")
)
Arguments
file |
file path to NCBI output file |
lines |
the raw lines of the text file |
col_names |
character vector of column names to assign |
Value
list, with one element per table
Author(s)
Matt Espe
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.