writeFasta: Write FASTA

In fishsciences/metabarcode_utils: Meta-barcoding Utilities

Write FASTA

Description

This function is based on one originally authored by Katie Karpenko for writing FASTA files out. The functionality is identical to that function, but this version has been optimized.

Usage

writeFasta(
  data,
  filename,
  sample_column = "SampleName",
  sequence_column = "ESVseq",
  ...
)

Arguments

data	data.frame
filename	character, the name of the file to write to
sample_column	character, the name of the sample ID column in data
sequence_column	character, the name of the sequence column in data
...	addtional args passed to writeLines()

Value

filename, the path to the file that was written

Author(s)

Matt Espe and Katie Karpenko

fishsciences/metabarcode_utils documentation built on Feb. 25, 2024, 11:31 a.m.