API for flr/FLCore
Core Package of FLR, Fisheries Modelling in R

Global functions
$,FLPar-method	Man page
$,FLQuant-method	Man page
$<-,FLPar,ANY-method	Man page
$<-,FLPar-method	Man page
$<-,FLlst,ANY-method	Man page
$<-,FLlst-method	Man page
%	Man page
%*%,FLPar,FLPar-method	Man page
%*%,FLPar,FLQuant-method	Man page
%*%,FLQuant,FLPar-method	Man page
%*%,FLQuant,FLQuant-method	Man page
%+%	Man page
%+%,FLPar,FLPar-method	Man page
%+%,FLPar,FLQuant-method	Man page
%+%,FLQuant,FLPar-method	Man page
%+%,FLQuant,FLQuant-method	Man page
%+%-methods	Man page
%-%	Man page
%-%,FLPar,FLPar-method	Man page
%-%,FLPar,FLQuant-method	Man page
%-%,FLQuant,FLPar-method	Man page
%-%,FLQuant,FLQuant-method	Man page
%-%-methods	Man page
%/%,FLPar,FLPar-method	Man page
%/%,FLPar,FLQuant-method	Man page
%/%,FLQuant,FLPar-method	Man page
%/%,FLQuant,FLQuant-method	Man page
%^%	Man page
%^%,FLPar,FLPar-method	Man page
%^%,FLPar,FLQuant-method	Man page
%^%,FLQuant,FLPar-method	Man page
%^%,FLQuant,FLQuant-method	Man page
%^%-methods	Man page
*,FLQuants,FLPar-method	Man page
*,FLQuants,FLPars-method	Man page
*,FLQuants,FLQuants-method	Man page
+,FLQuants,FLQuants-method	Man page
-,FLQuants,FLQuants-method	Man page
.biomass	Source code
.leslie	Source code
.onAttach	Source code
.runs.test	Source code
/,FLQuants,FLPar-method	Man page
/,FLQuants,FLPars-method	Man page
/,FLQuants,FLQuants-method	Man page
AIC	Man page
AIC,FLModel,missing-method	Man page
AIC,FLModel,numeric-method	Man page
Arith,FLArray,FLArray-method	Man page
Arith,FLArray,FLPar-method	Man page
Arith,FLArray,numeric-method	Man page
Arith,FLPar,FLArray-method	Man page
Arith,FLPar,FLPar-method	Man page
Arith,numeric,FLArray-method	Man page
BIC	Man page
BIC,FLModel-method	Man page
Bevholt.SV	Man page
Extract	Man page
FLArray	Man page
FLArray-class	Man page
FLBiol	Man page
FLBiol,FLQuant-method	Man page
FLBiol,missing-method	Man page
FLBiol-class	Man page
FLBiol-methods	Man page
FLBiolcpp-class	Man page
FLBiols	Man page
FLBiols,FLBiol-method	Man page
FLBiols,list-method	Man page
FLBiols,missing-method	Man page
FLBiols-class	Man page
FLBiols-methods	Man page
FLCohort	Man page
FLCohort,FLCohort-method	Man page
FLCohort,FLQuant-method	Man page
FLCohort,array-method	Man page
FLCohort,missing-method	Man page
FLCohort,vector-method	Man page
FLCohort-class	Man page
FLCohort-methods	Man page
FLCohorts	Man page
FLCohorts,ANY-method	Man page
FLCohorts,FLCohorts-method	Man page
FLCohorts,list-method	Man page
FLCohorts,missing-method	Man page
FLCohorts-class	Man page
FLCohorts-methods	Man page
FLComp	Man page
FLComp-class	Man page
FLComps	Man page
FLComps-class	Man page
FLI	Man page
FLI-class	Man page
FLIndex	Man page
FLIndex,FLQuant-method	Man page
FLIndex,missing-method	Man page
FLIndex-class	Man page
FLIndex-methods	Man page
FLIndexBiomass	Man page
FLIndexBiomass,FLQuant-method	Man page
FLIndexBiomass,missing-method	Man page
FLIndexBiomass-class	Man page
FLIndexBiomass-methods	Man page
FLIndices	Man page
FLIndices,FLI-method	Man page
FLIndices,list-method	Man page
FLIndices,missing-method	Man page
FLIndices-class	Man page
FLIndices-methods	Man page
FLModel	Man page
FLModel,character-method	Man page
FLModel,formula-method	Man page
FLModel,function-method	Man page
FLModel,missing-method	Man page
FLModel-class	Man page
FLModel-methods	Man page
FLModelSim	Man page
FLModelSim,character-method	Man page
FLModelSim,formula-method	Man page
FLModelSim,function-method	Man page
FLModelSim,missing-method	Man page
FLModelSim-class	Man page
FLModelSim-methods	Man page
FLModelSims	Man page
FLModelSims,ANY-method	Man page
FLModelSims,FLModelSims-method	Man page
FLModelSims,list-method	Man page
FLModelSims,missing-method	Man page
FLModelSims-class	Man page
FLModelSims-methods	Man page
FLPar	Man page
FLPar,FLPar-method	Man page
FLPar,array-method	Man page
FLPar,missing-method	Man page
FLPar,vector-method	Man page
FLPar-class	Man page
FLPar-methods	Man page
FLParJK	Man page
FLParJK,ANY-method	Man page
FLParJK-class	Man page
FLParPoint	Source code
FLPars	Man page
FLPars,ANY-method	Man page
FLPars,FLPars-method	Man page
FLPars,list-method	Man page
FLPars,missing-method	Man page
FLPars-class	Man page
FLPars-methods	Man page
FLQuant	Man page
FLQuant,FLQuant-method	Man page
FLQuant,array-method	Man page
FLQuant,matrix-method	Man page
FLQuant,missing-method	Man page
FLQuant,vector-method	Man page
FLQuant-class	Man page
FLQuant-methods	Man page
FLQuantDistr	Man page
FLQuantDistr,ANY,ANY-method	Man page
FLQuantDistr,FLQuant,FLQuant-method	Man page
FLQuantDistr-class	Man page
FLQuantDistr-methods	Man page
FLQuantJK	Man page
FLQuantJK,ANY-method	Man page
FLQuantJK-class	Man page
FLQuantPoint	Man page
FLQuantPoint,FLQuant-method	Man page
FLQuantPoint,missing-method	Man page
FLQuantPoint-class	Man page
FLQuantPoint-methods	Man page
FLQuants	Man page
FLQuants,ANY-method	Man page
FLQuants,FLComp-method	Man page
FLQuants,FLQuants-method	Man page
FLQuants,list-method	Man page
FLQuants,missing-method	Man page
FLQuants-class	Man page
FLQuants-methods	Man page
FLS	Man page
FLS-class	Man page
FLSR	Man page
FLSR,ANY-method	Man page
FLSR,missing-method	Man page
FLSR-class	Man page
FLSR-methods	Man page
FLSRs	Man page
FLSRs,ANY-method	Man page
FLSRs,FLSR-method	Man page
FLSRs,list-method	Man page
FLSRs,missing-method	Man page
FLSRs-class	Man page
FLSRs-methods	Man page
FLStock	Man page
FLStock,FLQuant-method	Man page
FLStock,FLQuants-method	Man page
FLStock,missing-method	Man page
FLStock-class	Man page
FLStock-methods	Man page
FLStockLen	Man page
FLStockLen,FLQuant-method	Man page
FLStockLen,missing-method	Man page
FLStockLen-class	Man page
FLStockLen-methods	Man page
FLStocks	Man page
FLStocks,ANY-method	Man page
FLStocks,FLStock-method	Man page
FLStocks,list-method	Man page
FLStocks,missing-method	Man page
FLStocks-class	Man page
FLStocks-methods	Man page
FLlst	Man page
FLlst,ANY-method	Man page
FLlst,list-method	Man page
FLlst,missing-method	Man page
FLlst-class	Man page
FLlst-methods	Man page
FUNCTION	Man page
Funwanted	Man page Source code
Fwanted	Source code
Ricker.SV	Man page
SRModelName	Source code
SRModels	Man page
SRNameCode	Source code
[,FLArray,ANY,ANY,ANY-method	Man page
[,FLArray,array,missing,missing-method	Man page
[,FLComp,ANY,ANY,ANY-method	Man page
[,FLI,ANY,ANY,ANY-method	Man page
[,FLPar,ANY,ANY,ANY-method	Man page
[,FLPar,array,missing,missing-method	Man page
[,FLQuantDistr,ANY,ANY,ANY-method	Man page
[,FLQuantDistr,array,missing,missing-method	Man page
[,FLStock,ANY,ANY,ANY-method	Man page
[,FLlst,ANY,missing,ANY-method	Man page
[,predictModel,ANY,missing,ANY-method	Man page
[<-,FLArray,ANY,ANY,ANY-method	Man page
[<-,FLArray,ANY,ANY,FLArray-method	Man page
[<-,FLComp,ANY,ANY,ANY-method	Man page
[<-,FLPar,ANY,ANY,ANY-method	Man page
[<-,FLStock,ANY,ANY,FLStock-method	Man page
[<-,FLlst,ANY,missing,ANY-method	Man page
[[<-,FLlst,ANY,missing,ANY-method	Man page
[[<-,FLlst,ANY,missing-method	Man page
`[<-,FLArray,ANY,ANY,ANY-method`	Man page
`[<-,FLArray,ANY,ANY,FLArray-method`	Man page
ab2sv	Man page
abModel	Source code
abPars	Source code
abind	Man page Source code
ac	Source code
acc	Man page
accessors	Man page
adjust,FLStock-method	Man page
ageopt	Man page
an	Source code
append,FLStock,FLStock-method	Man page
append-FLCore	Man page
apply,FLArray,numeric,function-method	Man page
apply,FLPar,ANY,ANY-method	Man page
apply,FLParJK,numeric,function-method	Man page
apply,FLQuantJK,numeric,function-method	Man page
ar1deviances	Source code
ar1rlnorm	Man page Source code
areaMeans	Man page
areaMeans,FLQuant-method	Man page
areaMeans,FLQuantDistr-method	Man page
areaSums	Man page
areaSums,FLQuant-method	Man page
areaSums,FLQuantDistr-method	Man page
areaVars	Man page
areaVars,FLQuant-method	Man page
areaVars,FLQuantDistr-method	Man page
as.FLSRs	Man page Source code
auc	Man page Source code
baranovCatch	Source code
barchart,formula,FLComp-method	Man page
barchart,formula,FLQuant-method	Man page
bevholt	Man page Source code
bevholt.ar1	Man page
bevholt.c.a	Man page
bevholt.c.b	Man page
bevholt.d	Man page
bevholt.ndc	Man page
bevholt.sv	Man page
bevholtAR1	Man page Source code
bevholtDa	Man page Source code
bevholtSV	Man page Source code
bevholtsig	Man page Source code
bevholtss3	Man page Source code
bheqz	Man page Source code
bias	Man page Source code
bias,FLParJK-method	Man page
biased	Source code
biomass_end	Source code Source code
biomass_spawn	Source code
bmsy	Man page
bmsy-methods	Man page
bubbles	Man page
bubbles,formula,FLCohort-method	Man page
bubbles,formula,FLQuant-method	Man page
bubbles,formula,FLQuants-method	Man page
bubbles,formula,data.frame-method	Man page
bubbles-methods	Man page
bwplot,formula,FLComp-method	Man page
bwplot,formula,FLQuant-method	Man page
calc.pg	Source code
catch	Man page
catch,FLStock-method	Man page
catch,FLStockLen-method	Man page
catch.n	Man page
catch.n,FLIndex-method	Man page
catch.n,FLIndexBiomass-method	Man page
catch.n,FLQuant-method	Man page
catch.n,FLStock-method	Man page
catch.n,FLStockLen-method	Man page
catch.n<-	Man page
catch.n<-,FLIndex,FLQuant-method	Man page
catch.n<-,FLIndex,numeric-method	Man page
catch.n<-,FLIndexBiomass,FLQuant-method	Man page
catch.n<-,FLIndexBiomass,numeric-method	Man page
catch.n<-,FLStock,FLQuant-method	Man page
catch.n<-,FLStock,numeric-method	Man page
catch.n<-,FLStockLen,FLQuant-method	Man page
catch.n<-,FLStockLen,numeric-method	Man page
catch.q	Man page
catch.q<-	Man page
catch.wt	Man page
catch.wt,FLIndex-method	Man page
catch.wt,FLIndexBiomass-method	Man page
catch.wt,FLStock-method	Man page
catch.wt,FLStockLen-method	Man page
catch.wt<-	Man page
catch.wt<-,FLIndex,FLQuant-method	Man page
catch.wt<-,FLIndex,numeric-method	Man page
catch.wt<-,FLIndexBiomass,FLQuant-method	Man page
catch.wt<-,FLIndexBiomass,numeric-method	Man page
catch.wt<-,FLStock,FLQuant-method	Man page
catch.wt<-,FLStock,numeric-method	Man page
catch.wt<-,FLStockLen,FLQuant-method	Man page
catch.wt<-,FLStockLen,numeric-method	Man page
catch<-	Man page
catch<-,FLS,FLQuants-method	Man page
catch<-,FLStock,FLQuant-method	Man page
catch<-,FLStock,FLQuants-method	Man page
catch<-,FLStock,numeric-method	Man page
catch<-,FLStockLen,FLQuant-method	Man page
catch<-,FLStockLen,numeric-method	Man page
catchInmature	Man page Source code
catchMature	Man page Source code
checkIndex	Source code
coerce-methods	Man page
compare	Man page
compute	Man page
computeCatch	Man page
computeCatch,FLS-method	Man page
computeCatch,FLStock-method	Man page
computeCatch,FLStockLen-method	Man page
computeCatch-methods	Man page
computeDiscards	Man page
computeDiscards,FLS-method	Man page
computeDiscards,FLStock-method	Man page
computeDiscards-methods	Man page
computeHarvest	Man page
computeHarvest,FLStock,missing-method	Man page
computeHarvest-methods	Man page
computeLandings	Man page
computeLandings,FLS-method	Man page
computeLandings,FLStock-method	Man page
computeLandings,FLStockLen-method	Man page
computeLandings-methods	Man page
computeStock	Man page
computeStock,FLS-method	Man page
computeStock,FLStock-method	Man page
computeStock,FLStockLen-method	Man page
computeStock-methods	Man page
condNms	Source code
cor2cov	Source code
covar,FLSR-method	Man page
covar<-,FLSR,FLQuants-method	Man page
cpue	Man page
cpue,FLStock,missing-method	Man page
cpue,FLStock-method	Man page
cpue-methods	Man page
createFLAccesors	Man page Source code
cushing	Man page Source code
datasets	Man page
dbind	Man page
dbind,FLArray,FLArray-method	Man page
dbind-methods	Man page
densityplot,formula,FLPar-method	Man page
desc	Man page
desc,FLBiol-method	Man page
desc,FLComp-method	Man page
desc,FLIndex-method	Man page
desc,FLIndexBiomass-method	Man page
desc,FLSR-method	Man page
desc,FLStock-method	Man page
desc,FLStockLen-method	Man page
desc<-	Man page
desc<-,FLBiol,character-method	Man page
desc<-,FLComp,character-method	Man page
desc<-,FLIndex,character-method	Man page
desc<-,FLIndexBiomass,character-method	Man page
desc<-,FLSR,character-method	Man page
desc<-,FLStock,character-method	Man page
desc<-,FLStockLen,character-method	Man page
details	Man page
details,FLSR-method	Man page
details<-	Man page
details<-,FLSR,list-method	Man page
dimMeans	Man page
dimSummaries	Man page
dimSums	Man page
dimVars	Man page
dims	Man page
dims,FLQuant-method	Man page
dims-methods	Man page
discards	Man page
discards,FLStock-method	Man page
discards,FLStockLen-method	Man page
discards.n	Man page
discards.n,FLStock-method	Man page
discards.n,FLStockLen-method	Man page
discards.n<-	Man page
discards.n<-,FLStock,FLQuant-method	Man page
discards.n<-,FLStock,numeric-method	Man page
discards.n<-,FLStockLen,FLQuant-method	Man page
discards.n<-,FLStockLen,numeric-method	Man page
discards.sel	Man page
discards.sel<-	Man page
discards.wt	Man page
discards.wt,FLStock-method	Man page
discards.wt,FLStockLen-method	Man page
discards.wt<-	Man page
discards.wt<-,FLStock,FLQuant-method	Man page
discards.wt<-,FLStock,numeric-method	Man page
discards.wt<-,FLStockLen,FLQuant-method	Man page
discards.wt<-,FLStockLen,numeric-method	Man page
discards<-	Man page
discards<-,FLStock,FLQuant-method	Man page
discards<-,FLStock,numeric-method	Man page
discards<-,FLStockLen,FLQuant-method	Man page
discards<-,FLStockLen,numeric-method	Man page
discardsRatio	Man page Source code
distr	Man page
distr<-	Man page
distribution	Man page
distribution,FLIndex-method	Man page
distribution,FLIndexBiomass-method	Man page
distribution,FLSR-method	Man page
distribution<-	Man page
distribution<-,FLIndex,character-method	Man page
distribution<-,FLIndexBiomass,character-method	Man page
distribution<-,FLSR,character-method	Man page
distribution<-,FLSR,factor-method	Man page
dotplot,formula,FLComp-method	Man page
dotplot,formula,FLQuant-method	Man page
drop,FLArray-method	Man page
drop,FLQuant-method	Man page
effort	Man page
effort,FLIndex-method	Man page
effort,FLIndexBiomass-method	Man page
effort<-	Man page
effort<-,FLIndex,FLQuant-method	Man page
effort<-,FLIndexBiomass,FLQuant-method	Man page
evalPredictModel	Man page Source code
exp,FLQuant-method	Man page
expandAgeFLStock	Source code
fec	Man page
fec,FLBiol-method	Man page
fec<-	Man page
fec<-,FLBiol,FLQuant-method	Man page
ffwd	Man page Source code
fillFLCdimnames	Source code
filldimnames	Source code
find.original.name	Source code
find.original.names	Source code
fitted	Man page
fitted,FLSR-method	Man page
fitted<-	Man page
fitted<-,FLSR,FLArray-method	Man page
fitted<-,FLSR,numeric-method	Man page
fmsy	Man page
fmsy-methods	Man page
fwdWindow	Man page
fwdWindow,FLStock,missing-method	Man page
geomean	Man page Source code
getBHSR	Source code
getCPUEolist	Source code
getColist	Source code
getDir	Source code
getExt	Source code Source code
getFLPar	Source code
getFLQ	Source code
getFile	Source code
getFya	Source code
getM.age	Source code
getNBootRetro	Source code
getRetros	Source code
getSlotNamesClass	Man page Source code
getnages	Source code
getnfish	Source code
getnpd	Source code
getnreal	Source code
getnreg	Source code
getoutputparfile	Source code
getplotdat0	Source code
getplotdat2	Source code
getplotdat4	Source code
getqedlist	Source code
getqlist	Source code
getrtimes	Source code
getselect	Source code
getwt.age	Source code
gompertz	Man page Source code
gr	Man page
gr,FLSR-method	Man page
gr<-	Man page
gr<-,FLSR,function-method	Man page
group	Man page
group,FLQuant,function-method	Man page
halfwidth,FLStockLen-method	Man page
halfwidth<-,FLStockLen,-method	Man page
harvest	Man page
harvest,FLStock-method	Man page
harvest,FLStockLen-method	Man page
harvest.spwn	Man page
harvest.spwn,FLStock-method	Man page
harvest.spwn,FLStockLen-method	Man page
harvest.spwn<-	Man page
harvest.spwn<-,FLStock,FLQuant-method	Man page
harvest.spwn<-,FLStock,numeric-method	Man page
harvest.spwn<-,FLStockLen,FLQuant-method	Man page
harvest.spwn<-,FLStockLen,numeric-method	Man page
harvest<-	Man page
harvest<-,FLStock,FLQuant-method	Man page
harvest<-,FLStock,character-method	Man page
harvest<-,FLStock,numeric-method	Man page
harvest<-,FLStockLen,FLQuant-method	Man page
harvest<-,FLStockLen,character-method	Man page
harvest<-,FLStockLen,numeric-method	Man page
head,FLQuant-method	Man page
hessian	Man page
hessian,FLSR-method	Man page
hessian<-	Man page
hessian<-,FLSR,array-method	Man page
histogram,formula,FLComp-method	Man page
histogram,formula,FLQuant-method	Man page
histogram,formula,FLQuants-method	Man page
hyperstability	Source code
iav	Man page Source code
ibind	Man page Source code
index	Man page
index,FLIndex-method	Man page
index,FLIndexBiomass-method	Man page
index.q	Man page
index.q,FLIndex-method	Man page
index.q,FLIndexBiomass-method	Man page
index.q<-	Man page
index.q<-,FLIndex,FLQuant-method	Man page
index.q<-,FLIndex,numeric-method	Man page
index.q<-,FLIndexBiomass,FLQuant-method	Man page
index.q<-,FLIndexBiomass,numeric-method	Man page
index.var	Man page
index.var,FLIndex-method	Man page
index.var,FLIndexBiomass-method	Man page
index.var<-	Man page
index.var<-,FLIndex,FLQuant-method	Man page
index.var<-,FLIndex,numeric-method	Man page
index.var<-,FLIndexBiomass,FLQuant-method	Man page
index.var<-,FLIndexBiomass,numeric-method	Man page
index<-	Man page
index<-,FLIndex,FLQuant-method	Man page
index<-,FLIndex,numeric-method	Man page
index<-,FLIndexBiomass,FLQuant-method	Man page
index<-,FLIndexBiomass,numeric-method	Man page
indicators.len	Man page
initial	Man page
initial,FLSR-method	Man page
initial<-	Man page
initial<-,FLSR,function-method	Man page
intersect	Man page
invALK	Source code
is.FLIndex	Source code
is.FLQuant	Source code
is.FLStock	Source code
iter	Man page
iter,FLArray-method	Man page
iter,FLCohort,ANY-method	Man page
iter,FLQuant,ANY-method	Man page
iter-methods	Man page
iterCVs	Man page
iterCVs,FLQuant-method	Man page
iterMeans	Man page
iterMeans,FLPar-method	Man page
iterMeans,FLQuant-method	Man page
iterMeans,FLQuantDistr-method	Man page
iterMedians	Man page
iterMedians,FLPar-method	Man page
iterMedians,FLQuant-method	Man page
iterMedians,FLQuantDistr-method	Man page
iterProb	Man page
iterProb,FLQuant-method	Man page
iterSums	Man page
iterSums,FLPar-method	Man page
iterSums,FLQuant-method	Man page
iterVars	Man page
iterVars,FLPar-method	Man page
iterVars,FLQuant-method	Man page
iterVars,FLQuantDistr-method	Man page
ivonbert	Man page Source code
jackknife	Man page
jackknife,FLModel-method	Man page
jackknife,FLQuant-method	Man page
jackknife,FLQuants-method	Man page
jackknife-methods	Man page
join	Man page
join,FLQuant,FLQuant-method	Man page
join,FLQuants,missing-method	Man page
knit_print.FLQuant	Source code
l25	Man page Source code
l95	Man page Source code
landings	Man page
landings,FLStock-method	Man page
landings,FLStockLen-method	Man page
landings.n	Man page
landings.n,FLStock-method	Man page
landings.n,FLStockLen-method	Man page
landings.n<-	Man page
landings.n<-,FLStock,FLQuant-method	Man page
landings.n<-,FLStock,numeric-method	Man page
landings.n<-,FLStockLen,FLQuant-method	Man page
landings.n<-,FLStockLen,numeric-method	Man page
landings.sel	Man page
landings.sel<-	Man page
landings.wt	Man page
landings.wt,FLStock-method	Man page
landings.wt,FLStockLen-method	Man page
landings.wt<-	Man page
landings.wt<-,FLStock,FLQuant-method	Man page
landings.wt<-,FLStock,numeric-method	Man page
landings.wt<-,FLStockLen,FLQuant-method	Man page
landings.wt<-,FLStockLen,numeric-method	Man page
landings<-	Man page
landings<-,FLStock,FLQuant-method	Man page
landings<-,FLStock,numeric-method	Man page
landings<-,FLStockLen,FLQuant-method	Man page
landings<-,FLStockLen,numeric-method	Man page
lattice	Man page
lattice-FLCore	Man page
lbar	Man page Source code
lc50	Man page Source code
lenSamples	Source code
lenquantile	Man page Source code
lmax5	Man page Source code
lmaxy	Man page Source code
lmean	Man page Source code
lmode	Man page Source code
log,FLQuant-method	Man page
logLik	Man page
logLik,FLSR-method	Man page
logLik<-	Man page
logLik<-,FLSR,logLik-method	Man page
logLik<-,FLSR,numeric-method	Man page
logerror	Man page
logerror<-	Man page
logl	Man page
logl,FLSR-method	Man page
logl.ar1	Man page
logl<-	Man page
logl<-,FLSR,function-method	Man page
lopt	Source code
lower	Man page
lower,FLModel-method	Man page
lower-methods	Man page
lower.panel	Source code Source code
lower<-	Man page
lower<-,FLModel,numeric-method	Man page
lower<--methods	Man page
lowq,FLQuantPoint-method	Man page
lowq<-,FLQuantPoint,FLQuant-method	Man page
m	Man page
m,FLBiol-method	Man page
m,FLStock-method	Man page
m,FLStockLen-method	Man page
m.spwn	Man page
m.spwn,FLStock-method	Man page
m.spwn,FLStockLen-method	Man page
m.spwn<-	Man page
m.spwn<-,FLStock,FLQuant-method	Man page
m.spwn<-,FLStock,numeric-method	Man page
m.spwn<-,FLStockLen,FLQuant-method	Man page
m.spwn<-,FLStockLen,numeric-method	Man page
m<-	Man page
m<-,FLBiol,FLQuant-method	Man page
m<-,FLStock,FLQuant-method	Man page
m<-,FLStock,numeric-method	Man page
m<-,FLStockLen,FLQuant-method	Man page
m<-,FLStockLen,numeric-method	Man page
mase	Man page
mase,FLIndices,list-method	Man page
mase,FLQuant,FLQuants-method	Man page
mat	Man page
mat,FLStock-method	Man page
mat,FLStockLen-method	Man page
mat<-	Man page
mat<-,FLStock,FLQuant-method	Man page
mat<-,FLStock,numeric-method	Man page
mat<-,FLStockLen,FLQuant-method	Man page
mat<-,FLStockLen,numeric-method	Man page
matchDimnames	Source code
mean,FLQuantPoint-method	Man page
mean<-,FLQuantPoint,FLQuant-method	Man page
meanage	Man page Source code
meanageCatch	Man page Source code
meanwt	Man page Source code
meanwtCatch	Man page Source code
median,FLQuantPoint-method	Man page
median<-,FLQuantPoint,FLQuant-method	Man page
mergeFLStock	Source code
metrics	Man page
metrics,FLComp,list-method	Man page
metrics,FLS,missing-method	Man page
metrics-methods	Man page
mixed	Source code
mixedsrr	Man page Source code
mlc	Source code
model	Man page
model,FLSR-method	Man page
model<-	Man page
model<-,FLSR,character-method	Man page
model<-,FLSR,formula-method	Man page
model<-,FLSR,function-method	Man page
model<-,FLSR,list-method	Man page
mohnMatrix	Man page Source code
msy	Man page
msy-methods	Man page
n	Man page
n,FLBiol-method	Man page
n,FLQuantPoint-method	Man page
n<-	Man page
n<-,FLBiol,FLQuant-method	Man page
name	Man page
name,	Man page
name,FLBiol-method	Man page
name,FLComp-method	Man page
name,FLIndex-method	Man page
name,FLIndexBiomass-method	Man page
name,FLSR-method	Man page
name,FLStock-method	Man page
name,FLStockLen-method	Man page
name<-	Man page
name<-,FLBiol,character-method	Man page
name<-,FLComp,character-method	Man page
name<-,FLIndex,character-method	Man page
name<-,FLIndexBiomass,character-method	Man page
name<-,FLSR,character-method	Man page
name<-,FLStock,character-method	Man page
name<-,FLStockLen,character-method	Man page
name<-<-	Man page
names	Man page
names,FLArray-method	Man page
names,FLPar-method	Man page
names<-,FLPar,character-method	Man page
newlogLik	Source code
noarea	Source code
noiseFn	Source code
noseason	Source code
nounit	Source code
nsher	Man page
operators	Man page
orig,FLParJK-method	Man page
orig,FLQuantJK-method	Man page
orig,FLQuants-method	Man page
pairwiseConsistency	Source code Source code
params	Man page
params,	Man page
params,FLSR-method	Man page
params<-	Man page
params<-,FLSR,FLPar-method	Man page
params<-<-	Man page
ple4	Man page
ple4.biol	Man page
ple4.index	Man page
ple4.indices	Man page
ple4sex	Man page
plot	Man page
plot,FLBiol,missing-method	Man page
plot,FLCohort,missing-method	Man page
plot,FLIndex,missing-method	Man page
plot,FLIndices,missing-method	Man page
plot,FLPar,missing-method	Man page
plot,FLQuant,missing-method	Man page
plot,FLQuantPoint,missing-method	Man page
plot,FLSR,missing-method	Man page
plot,FLStock,missing-method	Man page
plot,FLStocks,FLPar-method	Man page
plot,FLStocks,missing-method	Man page
plotFunc	Source code
plotResidAR1	Source code
plotResidAll	Source code
plotResidQQ	Source code
plotResidX	Source code
plotResidYr	Source code
plotinternal	Source code Source code
plotts	Source code Source code
pmega	Man page Source code
posFile	Source code
predictModel	Man page
predictModel,FLQuants,character-method	Man page
predictModel,FLQuants,formula-method	Man page
predictModel,FLQuants,function-method	Man page
predictModel,FLQuants,list-method	Man page
predictModel,FLQuants,missing-method	Man page
predictModel,missing,ANY-method	Man page
predictModel-class	Man page
predictModel-methods	Man page
production	Man page
production,FLStock-method	Man page
propagate	Man page
propagate,FLQuant-method	Man page
propagate-methods	Man page
properties	Man page
qbind	Man page Source code
quant	Man page
quant,FLArray-method	Man page
quant-methods	Man page
quant<-,FLArray,character-method	Man page
quantMeans	Man page
quantMeans,FLQuant-method	Man page
quantSums	Man page
quantSums,FLQuant-method	Man page
quantSums-methods	Man page
quantTotals	Man page
quantTotals-methods	Man page
quantVars	Man page
quantVars,FLQuant-method	Man page
quantVars,FLQuantDistr-method	Man page
quantile,FLQuantPoint-method	Man page
range,FLBiol-method	Man page
range,FLComp-method	Man page
range,FLIndex-method	Man page
range,FLIndexBiomass-method	Man page
range,FLSR-method	Man page
range,FLStock-method	Man page
range,FLStockLen-method	Man page
range<-	Man page
range<-,FLBiol,numeric-method	Man page
range<-,FLComp,numeric-method	Man page
range<-,FLIndex,numeric-method	Man page
range<-,FLIndexBiomass,numeric-method	Man page
range<-,FLSR,numeric-method	Man page
range<-,FLStock,numeric-method	Man page
range<-,FLStockLen,numeric-method	Man page
read.FLIndex	Source code
read.FLIndices	Source code
readADMB	Source code
readAdaptFile	Source code
readBinary	Source code
readCSAFile	Source code
readFLIndex	Source code
readFLIndices	Source code
readFLStock	Source code
readIndicesAdapt	Source code
readIndicesCSA	Source code
readIndicesICA	Source code
readIndicesICA.ssb	Source code
readIndicesVPA	Source code
readPAFile	Source code
readVPA	Source code
readVPA2Box	Source code
readVPAFile	Source code
readVPAIntercatch	Man page Source code
rec	Man page
rec,FLSR-method	Man page
rec.obs	Man page
rec.obs<-	Man page
rec<-	Man page
rec<-,FLSR,FLQuant-method	Man page
rec<-,FLSR,numeric-method	Man page
recomputeHarvest	Source code
residuals,FLSR-method	Man page
residuals-FLQuant	Man page
residuals<-	Man page
residuals<-,FLSR,FLArray-method	Man page
residuals<-,FLSR,numeric-method	Man page
respanel	Source code
returnPredictModelSlot	Source code
rho	Source code
richards	Man page Source code
ricker	Man page Source code
ricker.ar1	Man page
ricker.c.a	Man page
ricker.c.b	Man page
ricker.d	Man page
ricker.sv	Man page
rickerAR1	Man page Source code
rickerCa	Man page Source code
rickerSV	Man page Source code
rlnoise	Man page
rlnoise,numeric,FLQuant-method	Man page
rlnoise,numeric,missing-method	Man page
rlnoise-method	Man page
rlnormar1	Source code
rnoise	Man page
rnoise,numeric,FLQuant-method	Man page
rnoise,numeric,missing-method	Man page
rnoise-method	Man page
roc	Man page Source code
ruleset	Man page
ruleset,FLStock-method	Man page
run.info	Source code
runstest	Man page
runstest,FLQuant,FLQuant-method	Man page
runstest,FLQuant,missing-method	Man page
runstest,FLQuants,FLQuants-method	Man page
runstest,FLQuants,missing-method	Man page
runstest,numeric,missing-method	Man page
runstest,numeric,numeric-method	Man page
rwalk	Man page Source code
sbind	Man page Source code
sbmsy	Man page
sbmsy-methods	Man page
scanText	Source code
se	Source code
seasonMeans	Man page
seasonMeans,FLQuant-method	Man page
seasonMeans,FLQuantDistr-method	Man page
seasonSums	Man page
seasonSums,FLQuant-method	Man page
seasonSums,FLQuantDistr-method	Man page
seasonVars	Man page
seasonVars,FLQuant-method	Man page
seasonVars,FLQuantDistr-method	Man page
segreg	Man page Source code
segregAR1	Man page Source code
segregDa	Man page Source code
sel.pattern	Man page
sel.pattern,FLIndex-method	Man page
sel.pattern,FLIndexBiomass-method	Man page
sel.pattern<-	Man page
sel.pattern<-,FLIndex,FLQuant-method	Man page
sel.pattern<-,FLIndex,numeric-method	Man page
sel.pattern<-,FLIndexBiomass,FLQuant-method	Man page
sel.pattern<-,FLIndexBiomass,numeric-method	Man page
set.index	Source code
setquant	Source code
setunits	Man page Source code
shepherd	Man page Source code
shepherd.ar1	Man page
shepherd.d	Man page
shepherd.d.ar1	Man page
shepherd.ndc	Man page
shepherd.ndc.ar1	Man page
shepherdSV	Man page Source code
show	Man page
show,FLArray-method	Man page
show,FLPar-method	Man page
show,FLQuants-method	Man page
sigma3	Source code
simplify	Man page
simplify,FLStock-method	Man page
simplify-methods	Man page
skip.hash	Source code
skip.until.hash	Source code
slim	Man page
slim,FLComp-method	Man page
slim-methods	Man page
solveBaranov	Source code
sop	Source code
split,FLComp,vector-method	Man page
split-methods	Man page
splom	Man page
splom,FLPar,missing-method	Man page
spr2v	Source code
spread	Man page Source code
spwn	Man page
spwn,FLBiol-method	Man page
spwn<-	Man page
spwn<-,FLBiol,FLQuant-method	Man page
srpanel	Source code
srr2s	Source code
ssb	Man page
ssb,FLBiol-method	Man page
ssb,FLSR-method	Man page
ssb-FLBiol,method	Man page
ssb-methods	Man page
ssb<-,FLSR,FLQuant-method	Man page
ssb<-,FLSR,numeric-method	Man page
ssb_end	Source code
ssb_next	Man page Source code
ssb_start	Source code
standardUnits	Man page
standardUnits,FLBiol-method	Man page
standardUnits,FLS-method	Man page
standardUnits,character-method	Man page
stock	Man page
stock,FLStock-method	Man page
stock,FLStockLen-method	Man page
stock.n	Man page
stock.n,FLStock-method	Man page
stock.n,FLStockLen-method	Man page
stock.n<-	Man page
stock.n<-,FLStock,FLQuant-method	Man page
stock.n<-,FLStock,numeric-method	Man page
stock.n<-,FLStockLen,FLQuant-method	Man page
stock.n<-,FLStockLen,numeric-method	Man page
stock.wt	Man page
stock.wt,FLStock-method	Man page
stock.wt,FLStockLen-method	Man page
stock.wt<-	Man page
stock.wt<-,FLStock,FLQuant-method	Man page
stock.wt<-,FLStock,numeric-method	Man page
stock.wt<-,FLStockLen,FLQuant-method	Man page
stock.wt<-,FLStockLen,numeric-method	Man page
stock<-	Man page
stock<-,FLStock,FLQuant-method	Man page
stock<-,FLStock,numeric-method	Man page
stock<-,FLStockLen,FLQuant-method	Man page
stock<-,FLStockLen,numeric-method	Man page
stripplot,formula,FLComp-method	Man page
stripplot,formula,FLQuant-method	Man page
summary,FLArray-method	Man page
summary,FLBiol-method	Man page
summary,FLComp-method	Man page
summary,FLModel-method	Man page
summary,FLPar-method	Man page
summary,FLQuantPoint-method	Man page
summary,FLQuants-method	Man page
summary,FLQuants-methods	Man page
summary,FLlst-method	Man page
summary,FLlst-methods	Man page
summary,predictModel-method	Man page
survRec	Man page Source code
survSRR	Man page Source code
survey	Man page
survey,FLStock,FLIndex-method	Man page
survey,FLStock,FLIndexBiomass-method	Man page
survey,FLStock,FLIndices-method	Man page
survey,FLStock,missing-method	Man page
survivors	Man page Source code
sv2ab	Man page
svModel	Source code
svPars	Source code
sweep,FLArray-method	Man page
sweep,FLPar-method	Man page
tail,FLQuant-method	Man page
trim	Man page
trim,FLArray-method	Man page
trim,FLBiol-method	Man page
trim,FLComp-method	Man page
trim,FLS-method	Man page
trim-methods	Man page
type	Man page
type,FLIndex-method	Man page
type<-	Man page
type<-,FLIndex,character-method	Man page
ubind	Man page Source code
unitMeans	Man page
unitMeans,FLQuant-method	Man page
unitMeans,FLQuantDistr-method	Man page
unitSums	Man page
unitSums,FLQuant-method	Man page
unitSums,FLQuantDistr-method	Man page
unitVars	Man page
unitVars,FLQuant-method	Man page
unitVars,FLQuantDistr-method	Man page
units,FLArray-method	Man page
units,FLComp-method	Man page
units,FLPar-method	Man page
units-FLCore	Man page
units<-,FLArray,character-method	Man page
units<-,FLComp,character-method	Man page
units<-,FLComp,function-method	Man page
units<-,FLComp,list-method	Man page
units<-,FLPar,character-method	Man page
uom	Man page Source code
uomTable	Man page
uomUnits	Man page Source code
upper	Man page
upper,FLModel-method	Man page
upper-methods	Man page
upper.panel	Source code Source code
upper<-	Man page
upper<-,FLModel,numeric-method	Man page
upper<--methods	Man page
upperlower	Man page
uppq,FLQuantPoint-method	Man page
uppq<-,FLQuantPoint,FLQuant-method	Man page
var,FLQuantPoint-method	Man page
var<-,FLQuantPoint,FLQuant-method	Man page
vcov	Man page
vcov,FLSR-method	Man page
vcov<-	Man page
vcov<-,FLSR,array-method	Man page
verify	Man page
verify,FLComp-method	Man page
verify,FLStock-method	Man page
vonbert	Man page Source code
vpa2BoxFiles	Source code
weighted.mean,FLQuants,FLQuants-method	Man page
wireframe	Man page
wireframe,FLQuant-method	Man page
writeADMB	Source code
writeFLStock	Source code
writeIndicesICA	Source code
writeIndicesVPA	Source code
writeVPA	Source code
wt	Man page
wt,FLBiol-method	Man page
wt<-	Man page
wt<-,FLBiol,FLQuant-method	Man page
xyplot,formula,FLCohort-method	Man page
xyplot,formula,FLComp-method	Man page
xyplot,formula,FLQuant-method	Man page
xyplot,formula,FLQuants-method	Man page
ybind	Man page Source code
yearMeans	Man page
yearMeans,FLQuant-method	Man page
yearMeans,FLQuantDistr-method	Man page
yearMedians	Man page
yearMedians,FLQuant-method	Man page
yearSample	Man page Source code
yearSums	Man page
yearSums,FLQuant-method	Man page
yearSums,FLQuantDistr-method	Man page
yearTotals	Man page
yearTotals-methods	Man page
yearVars	Man page
yearVars,FLQuant-method	Man page
yearVars,FLQuantDistr-method	Man page
z	Man page
z,FLS-method	Man page
z-methods	Man page