Files in fmichonneau/chopper
Alignment Manipulations and Data Preparation for Phylogenetic Analyses
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/alg2csv.R
R/alg2nex.R
R/barMonophyletic.R
R/checkAmbiguity.R
R/checkInternalGaps.R
R/chopper-package.R
R/cleanSeqLabels.R
R/completeSeqWithGaps.R
R/concatenateAlignments.R
R/convertGaps.R
R/convertRAxMLedgeLabels.R
R/csv2alg.R
R/cutAlignment.R
R/dealign.R
R/expandPartitionInfo.R
R/fas2phy.R
R/mergeAlignment.R
R/mergeSequences.R
R/nbases.R
R/nexusPartitionCreate.R
R/raxmlPartitionCreate.R
R/raxmlPartitionInfo.R
R/removeEmptySeqs.R
R/removeFastaComments.R
R/seq.write.nexus.data.R
R/splitAlignment.R
R/splitMultiAlignments.R
R/split_nexus.R
README.md
man/alg2csv.Rd
man/alg2nex.Rd
man/barMonophyletic.Rd
man/checkAmbiguity.Rd
man/checkInternalGaps.Rd
man/chopper.Rd
man/cleanSeqLabels.Rd
man/completeSeqWithGaps.Rd
man/concatenateAlignments.Rd
man/convertGaps.Rd
man/convertRAxMLedgeLabels.Rd
man/cutAlignment.Rd
man/dealign.Rd
man/expandPartitionInfo.Rd
man/fas2phy.Rd
man/mergeAlignment.Rd
man/mergeSeq.Rd
man/nbase.Rd
man/nexusPartitionCreate.Rd
man/raxmlPartitionCreate.Rd
man/raxmlPartitionInfo.Rd
man/removeEmptySeqs.Rd
man/removeFastaComments.Rd
man/splitAlignment.Rd
man/splitMultiAlignments.Rd
tests/test-all.R
tests/testthat/test.checkAmbiguity.R
tests/testthat/test.cutAlignment.R
tests/testthat/test.expandPartitionInfo.R
tests/testthat/test.raxmlPartitionInfo.R
tests/testthat/test.removeEmptySeqs.R
tests/testthat/testPhy.phy
tests/testthat/testPhy_red.phy
