expandPartitionInfo: expandPartitionInfo
In fmichonneau/chopper: Alignment Manipulations and Data Preparation for Phylogenetic Analyses
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Expands information contained in a partitionInfo object to obtain
all base pair positions for a given alignment.
Usage
1
expandPartitionInfo(partitionInfo)
Arguments
partitionInfo
a partitionInfo object
Details
The partition are expanded in the same order as they are placed in
the partition file.
Value
a list named with partition names, that contains all base
pair positions for each partition.
Author(s)
Francois Michonneau
See Also
raxmlPartitionInfo
Examples
1
2
3
4
5
6
cat("DNA, p1 = 1-15\\3,2-15\\3",
"DNA, p2 = 3-15\\3", sep="\n",
file="testPartition.part")
pInfo <- raxmlPartitionInfo("testPartition.part")
expandPartitionInfo(pInfo)
unlink("testPartition.part")
fmichonneau/chopper documentation built on May 16, 2019, 1:43 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
Expands information contained in a partitionInfo object to obtain all base pair positions for a given alignment.
Usage
1 | expandPartitionInfo(partitionInfo)
|
Arguments
partitionInfo |
a partitionInfo object |
Details
The partition are expanded in the same order as they are placed in the partition file.
Value
a list named with partition names, that contains all base pair positions for each partition.
Author(s)
Francois Michonneau
See Also
raxmlPartitionInfo
Examples
1 2 3 4 5 6 | cat("DNA, p1 = 1-15\\3,2-15\\3",
"DNA, p2 = 3-15\\3", sep="\n",
file="testPartition.part")
pInfo <- raxmlPartitionInfo("testPartition.part")
expandPartitionInfo(pInfo)
unlink("testPartition.part")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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