convertRAxMLedgeLabels: Convert RAxML edge labels bootstrap values to node labels
In fmichonneau/chopper: Alignment Manipulations and Data Preparation for Phylogenetic Analyses
Description
Usage
Arguments
Details
Value
Author(s)
Description
Converts a tree created by RAxML so that the bootstrap values are
assigned to nodes instead of edges.
Usage
1
convertRAxMLedgeLabels(f, out)
Arguments
f
the tree file generated by RAxML
out
the tree file generated by this function
Details
By default, (and rightly so), RAxML returns the bootstrap values
on an unrooted tree assigned to the edges. Most often, users want
the bootstrap values assigned to nodes instead. This function uses
a little regular expression to assign the boostrap values to the
nodes. It might not always work, use with caution.
Value
TRUE is the function succeed. Used for this side effect
that creates a new tree where the bootstrap values are assigned to
nodes.
Author(s)
Francois Michonneau
fmichonneau/chopper documentation built on May 16, 2019, 1:43 p.m.
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Description Usage Arguments Details Value Author(s)
Description
Converts a tree created by RAxML so that the bootstrap values are assigned to nodes instead of edges.
Usage
1 | convertRAxMLedgeLabels(f, out)
|
Arguments
f |
the tree file generated by RAxML |
out |
the tree file generated by this function |
Details
By default, (and rightly so), RAxML returns the bootstrap values on an unrooted tree assigned to the edges. Most often, users want the bootstrap values assigned to nodes instead. This function uses a little regular expression to assign the boostrap values to the nodes. It might not always work, use with caution.
Value
TRUE is the function succeed. Used for this side effect that creates a new tree where the bootstrap values are assigned to nodes.
Author(s)
Francois Michonneau
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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