raxmlPartitionInfo: Information from a RAxML partition file
In fmichonneau/chopper: Alignment Manipulations and Data Preparation for Phylogenetic Analyses
Description
Usage
Arguments
Details
Value
Author(s)
Description
This function takes a RAxML partition file and returns information
about it as a list.
Usage
1
raxmlPartitionInfo(partfile)
Arguments
partfile
Path of a RAxML partition file
Details
Currently, this function ignores the type of data of each
partition, does not support the codon notation (e.g.,
1-300\3), and requires continuous partitions (e.g.,
1-300 works, but 1-300,401-500 doesn't work).
Value
A list that includes the elements:
filethe partition file name
locusNamea vector of character indicating
the name of each partition
locusStarta vector of numeric indicating the
first position in the alignment for the locus
locusEnda vector of numeric indicating the
last position in the alignement of the locus
Author(s)
Francois Michonneau
fmichonneau/chopper documentation built on May 16, 2019, 1:43 p.m.
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Description Usage Arguments Details Value Author(s)
Description
This function takes a RAxML partition file and returns information about it as a list.
Usage
1 | raxmlPartitionInfo(partfile)
|
Arguments
partfile |
Path of a RAxML partition file |
Details
Currently, this function ignores the type of data of each
partition, does not support the codon notation (e.g.,
1-300\3), and requires continuous partitions (e.g.,
1-300 works, but 1-300,401-500 doesn't work).
Value
A list that includes the elements:
filethe partition file name
locusNamea vector of character indicating the name of each partition
locusStarta vector of numeric indicating the first position in the alignment for the locus
locusEnda vector of numeric indicating the last position in the alignement of the locus
Author(s)
Francois Michonneau
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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