bichrom_dataset | Cleans and organizes dataset for BiChroM analyses |
chromploid | chromploid A package that calculates likelihood for... |
negloglikelihood | Calculates the negative log-likelihood of a chromosome or... |
ploidevol_dataset | Cleans and organizes dataset for PloidEvol analyses |
Q_bibichrom | Calculates Q-matrix for bivariate profile likelihoods for... |
Q_bichrom | Calculates Q-matrix for BiChroM model |
Q_biploidevol | Calculates Q-matrix for bivariate profile likelihoods for... |
Q_chromevolM3 | Calculates Q-matrix for chromevol M3 model (beta version) |
Q_ploidevol | Calculates Q-matrix for Ploidevol model |
Q_reducedbichrom | Calculates a Q matrix for reduced BiChroM model |
Q_unibichrom | Calculates Q-matrix for univariate profile likelihoods from... |
Q_uniploidevol | Calculates Q-matrix for univariate profile likelihoods for... |
sim.char2 | Simulates a a sample of chromosome number or ploidy change... |
stationary_ploidevol | Calculates stationary distribution for root under Ploidevol... |
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