Description Usage Arguments Details Value See Also
Cleans and organizes dataset for PloidEvol analyses
1 | ploidevol_dataset(ploidies, size = 12)
|
ploidies |
a vector with ploidy values, and taxon row.names |
size |
maximum ploidy value allow for analyses, by default is 12. See details for more information. |
This function cleans and organizes a vector of ploidies assuming ploidy values range from 2x to 12x. It deletes values larger than 12x and redefines ploidy values as value-1 since Q_ploidevol indices range from 1 to 11. If larger ploidy values are needed user needs to specify own Q.FUN to use in negloglikelihood.
ploidy.dataset a data frame whose first column is taxon name and second column the ploidy values-1. Saves the data frame as .txt file for future references. See details.
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