Q_bichrom: Calculates Q-matrix for BiChroM model
In fmichonneau/chromploid: Chromosome Number and Ploidy Evolution Models
Description
Usage
Arguments
Details
Value
Description
Calculates Q-matrix for BiChroM model
Usage
1
Q_bichrom(log.theta, size)
Arguments
log.theta
vector of size 10 indicating parameters in ln scale for BiChoM the order of the parameters is (lambda0, lambda1, mu0, mu1, rho0, rho1, q01,q10, e0, e1)
size
Maximum number of chromosomes in the sample (recommended no more than 50, states larger than that should be coded as 51)
Details
Q_bichrom determines the Q-matrix for a model of chromosome number change associated with a binary state with traits coded as 0 or 1.
Value
Q a sparse matrix of size 2*(size+1)
fmichonneau/chromploid documentation built on May 16, 2019, 1:43 p.m.
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Description Usage Arguments Details Value
Description
Calculates Q-matrix for BiChroM model
Usage
1 | Q_bichrom(log.theta, size)
|
Arguments
log.theta |
vector of size 10 indicating parameters in ln scale for BiChoM the order of the parameters is (lambda0, lambda1, mu0, mu1, rho0, rho1, q01,q10, e0, e1) |
size |
Maximum number of chromosomes in the sample (recommended no more than 50, states larger than that should be coded as 51) |
Details
Q_bichrom determines the Q-matrix for a model of chromosome number change associated with a binary state with traits coded as 0 or 1.
Value
Q a sparse matrix of size 2*(size+1)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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