Files in fosterlab/CFTK
The Co-Fractionation Toolkit
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/BayesianCorrelation.R
R/as_annotation_list.R
R/binomial.R
R/calculate_complex_auc.R
R/calculate_features.R
R/calculate_go_auc.R
R/calculate_precision.R
R/combine_matrices.R
R/cor.fk.2d.R
R/cor.fk.nz.R
R/dice.R
R/filter_matrix.R
R/filter_pairs.R
R/hamming.R
R/jaccard.R
R/kendall_zi.R
R/label_pairs.R
R/metrics.R
R/plot_pr.R
R/plot_roc.R
R/read_corum.R
R/read_go.R
R/read_maxquant.R
R/replace_missing_values.R
R/score_interactions.R
R/score_pairs.R
R/threshold_precision.R
R/to_adjacency_matrix.R
R/to_pairwise_df.R
R/transform_matrix.R
R/wtd_rank.R
README.md
data-raw/CORUM/coreComplexes.txt.gz
data-raw/GO/goa_human.gaf.gz
data-raw/GO/goslim_generic.obo.gz
data-raw/Gilbert2019/pr8b00382_si_002.xlsx
data-raw/PXD001220/rep1/proteinGroups.txt.gz
data-raw/PXD001220/rep2/proteinGroups.txt.gz
data-raw/PXD001220/rep3/proteinGroups.txt.gz
data-raw/PXD002322/Hs_IEX_1/proteinGroups.txt.gz
data-raw/PXD002322/Hs_IEX_2/proteinGroups.txt.gz
data-raw/PXD002323/Mm_HCW_1/proteinGroups.txt.gz
data-raw/PXD002323/Mm_HCW_2/proteinGroups.txt.gz
data-raw/PXD007288/Kidney/proteinGroups.txt.gz
data-raw/PXD007288/Liver/proteinGroups.txt.gz
data-raw/PXD007288/Lung/proteinGroups.txt.gz
data-raw/zenodo/PXD001220/rep1/LFQ.tsv.gz
data-raw/zenodo/PXD001220/rep1/MS1_intensity.tsv.gz
data-raw/zenodo/PXD001220/rep1/iBAQ.tsv.gz
data-raw/zenodo/PXD001220/rep1/metadata.tsv.gz
data-raw/zenodo/PXD001220/rep1/spectral_counts.tsv.gz
data-raw/zenodo/PXD001220/rep2/LFQ.tsv.gz
data-raw/zenodo/PXD001220/rep2/MS1_intensity.tsv.gz
data-raw/zenodo/PXD001220/rep2/iBAQ.tsv.gz
data-raw/zenodo/PXD001220/rep2/metadata.tsv.gz
data-raw/zenodo/PXD001220/rep2/spectral_counts.tsv.gz
data-raw/zenodo/PXD001220/rep3/LFQ.tsv.gz
data-raw/zenodo/PXD001220/rep3/MS1_intensity.tsv.gz
data-raw/zenodo/PXD001220/rep3/iBAQ.tsv.gz
data-raw/zenodo/PXD001220/rep3/metadata.tsv.gz
data-raw/zenodo/PXD001220/rep3/spectral_counts.tsv.gz
man/as_annotation_list.Rd
man/binomial.Rd
man/calculate_complex_auc.Rd
man/calculate_features.Rd
man/calculate_go_auc.Rd
man/calculate_precision.Rd
man/combine_matrices.Rd
man/cor.fk.nz.Rd
man/dice.Rd
man/filter_matrix.Rd
man/filter_pairs.Rd
man/gaf_colnames.Rd
man/get_splits.Rd
man/go_roots.Rd
man/hamming.Rd
man/impute_missing_features.Rd
man/jaccard.Rd
man/kendall_zi.Rd
man/label_pairs.Rd
man/merge_features.Rd
man/metrics.Rd
man/plot_pr.Rd
man/plot_roc.Rd
man/read_corum.Rd
man/read_gaf.Rd
man/read_maxquant.Rd
man/replace_missing_values.Rd
man/sanitize_missing_values.Rd
man/score_interactions.Rd
man/score_pairs.Rd
man/threshold_precision.Rd
man/to_adjacency_matrix.Rd
man/to_pairwise_df.Rd
man/transform_matrix.Rd
man/wtd_rank.Rd
vignettes/bibliography.bib
vignettes/intro-to-CFTK.Rmd
vignettes/intro-to-CFTK.html
vignettes/intro-to-CFTK.pdf
vignettes/pnas.csl
