Description Usage Arguments Details Value
Assess the intrinsic quality of a CF-MS dataset by evaluating the precision of the interaction network for any number of interactions scored. The x-axis in the output plot represents the total number of interactions (and can optionally be subset to a limited range), while the y-axis shows the precision for each point in the ranked list.
1 |
pairs |
a data frame in which each row represents a protein pair, and which contains the following columns:
|
max_n |
optionally, plot the precision-recall curve only out to this maximum number of interactions |
Note that the x-axis shows recall in terms of the total number of interactions in the CF-MS dataset, not the proportion of true-positive interactions recovered from the 'gold standard' dataset, since many of these interactions may not have been detected by CF-MS.
a ggplot2
object plotting the precision-recall curve for the input
interactions
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