read_corum: Read complexes from the CORUM database
In fosterlab/CFTK: The Co-Fractionation Toolkit
Description
Usage
Arguments
Value
Description
Utility function to read complexes from the 'coreComplexes.txt' file
distributed through the CORUM database into a two-column data frame, mapping
each complex (column 1) to its subunits (column 2).
Usage
1
read_corum(filepath, identifiers = c("uniprot", "entrez", "gene_name"))
Arguments
filepath
path to the 'coreComplexes.txt' file
identifiers
the set of protein identifiers to parse from the file;
one of 'uniprot', 'entrez', or 'gene_name'
Value
a data frame with protein complex names in column 1 and individual
subunits in column 2
fosterlab/CFTK documentation built on Jan. 19, 2021, 10:31 p.m.
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Description Usage Arguments Value
Description
Utility function to read complexes from the 'coreComplexes.txt' file distributed through the CORUM database into a two-column data frame, mapping each complex (column 1) to its subunits (column 2).
Usage
1 | read_corum(filepath, identifiers = c("uniprot", "entrez", "gene_name"))
|
Arguments
filepath |
path to the 'coreComplexes.txt' file |
identifiers |
the set of protein identifiers to parse from the file;
one of |
Value
a data frame with protein complex names in column 1 and individual subunits in column 2
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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