filter_pairs: Filter protein pairs from a chromatogram score matrix
In fosterlab/CFTK: The Co-Fractionation Toolkit
Description
Usage
Arguments
Value
Description
Replace pairs of proteins in a matrix output by score_pairs with
NAs, if the two proteins were not jointly quantified in some minimum
number of overlapping fractions.
Usage
1
filter_pairs(pairs, mat, min_pairs = 0)
Arguments
pairs
a square matrix scoring the similarity of each pair of
chromatograms, as returned by score_pairs
mat
The original CF-MS chromatogram matrix, with proteins in rows and
fractions in columns
min_pairs
minimum number of fractions in which a pair of proteins must
both be detected to consider scoring the candidate interaction
Value
a filtered version of the input square matrix, with a subset of
protein pairs replaced by NAs
fosterlab/CFTK documentation built on Jan. 19, 2021, 10:31 p.m.
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Description Usage Arguments Value
Description
Replace pairs of proteins in a matrix output by score_pairs with
NAs, if the two proteins were not jointly quantified in some minimum
number of overlapping fractions.
Usage
1 | filter_pairs(pairs, mat, min_pairs = 0)
|
Arguments
pairs |
a square matrix scoring the similarity of each pair of chromatograms, as returned by score_pairs |
mat |
The original CF-MS chromatogram matrix, with proteins in rows and fractions in columns |
min_pairs |
minimum number of fractions in which a pair of proteins must both be detected to consider scoring the candidate interaction |
Value
a filtered version of the input square matrix, with a subset of
protein pairs replaced by NAs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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