drawDimPlot: Draw Dim Plot
In fpestana-git/visualisR: Graphic visualization for transcriptomics data

View source: R/drawDimPlot.R

drawDimPlot

R Documentation

Draw Dim Plot

Description

Function that generates dim plots for a given Seurat dataset

Usage

drawDimPlot(
  seuratObject,
  datasetName,
  mapType = "umap",
  splitValue = NULL,
  heightValue = 10,
  widthValue = 10,
  colorVector = NULL,
  cells2highlight = NULL,
  sizeHighlightedCells = NULL,
  groupbyValue = NULL,
  labelValue = F,
  showLegend = FALSE,
  resultsFolder = resultsDirectory,
  plotMinimal = FALSE
)

Arguments

`seuratObject`	seurat data object
`datasetName`	name of dataset to use on the saved objects
`mapType`	set umap as default
`splitValue`	if the umap is to be splitted
`heightValue`	height of the final plot (default 6 cm)
`widthValue`	width of the final plot (default 6 cm)
`colorVector`
`cells2highlight`	highlight specific cells
`sizeHighlightedCells`	change size of highlighted cells
`groupbyValue`	metadava variable to visualize in the dim plot
`labelValue`	show or hide cluster labels (default FALSE)
`showLegend`	show or hide plot legend (default FALSE)
`resultsFolder`	directory where to save the results
`plotMinimal`	show a minimal plot